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All interfaces > All interologs > Interface groups > group61 > 7RYG_O_A

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7RYG_O
7RYG_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
O:4 [LYS] A:2839 [G] 3.66 A:2870 [C] 0.0
O:4 [LYS] A:2840 [A] 4.06 0.0
O:4 [LYS] A:2870 [C] 3.73 A:2839 [G] 0.0
O:4 [LYS] A:2871 [C] 3.01 A:2838 [G] sugar:BB 0.0
O:5 [HIS] A:2871 [C] 3.79 A:2838 [G] 0.0
O:5 [HIS] A:2872 [A] 4.31 A:2837 [U] 0.0
O:6 [PRO] A:2871 [C] 4.54 A:2838 [G] 0.0
O:6 [PRO] A:2872 [A] 4.22 A:2837 [U] 0.0
O:9 [GLN] A:2871 [C] 3.88 A:2838 [G] 0.0
O:53 [LYS] A:2842 [G] 4.46 A:2866 [C] 0.0
O:54 [LYS] A:2679 [C] 3.36 0.0
O:54 [LYS] A:2680 [U] 3.02 A:2721 [A] 0.0
O:54 [LYS] A:2842 [G] 4.18 A:2866 [C] 0.0
O:55 [ASN] A:2841 [U] 3.35 A:2867 [U] 0.0
O:55 [ASN] A:2842 [G] 3.35 A:2866 [C] 0.0
O:56 [ARG] A:2716 [U] 4.45 A:2869 [A] 0.0
O:56 [ARG] A:2717 [A] 4.13 A:2684 [G] 0.0
O:56 [ARG] A:2841 [U] 3.1 A:2867 [U] 0.0
O:56 [ARG] A:2842 [G] 3.0 A:2866 [C] 0.0
O:59 [ASN] A:2678 [U] 3.3 sugar:SC 0.0
O:59 [ASN] A:2679 [C] 3.46 0.0
O:61 [ALA] A:2680 [U] 3.95 A:2721 [A] 0.0
O:76 [VAL] A:2680 [U] 4.01 A:2721 [A] 0.0
O:76 [VAL] A:2681 [G] 3.92 A:2720 [U] 0.0
O:78 [GLN] A:2679 [C] 3.17 0.0
O:78 [GLN] A:2680 [U] 3.18 A:2721 [A] 0.0
O:96 [ARG] A:1748 [C] 3.93 A:1752 [G] 0.0
O:96 [ARG] A:1749 [G] 2.81 0.0
O:96 [ARG] A:1750 [C] 4.14 0.0
O:96 [ARG] A:2844 [G] 3.59 A:2864 [A] 0.0
O:96 [ARG] A:2845 [G] 3.28 0.0
O:96 [ARG] A:2858 [A] 4.62 A:2851 [U] 0.0
O:97 [ARG] A:1749 [G] 3.17 0.0
O:97 [ARG] A:1750 [C] 2.58 0.0
O:97 [ARG] A:2713 [G] 3.88 A:2688 [C] 0.0
O:97 [ARG] A:2844 [G] 3.7 A:2864 [A] 0.0
O:98 [ALA] A:2714 [G] 4.99 A:2687 [C] 0.0
O:98 [ALA] A:2843 [U] 3.63 A:2865 [G] 0.0
O:98 [ALA] A:2844 [G] 2.77 A:2864 [A] 0.0
O:99 [LYS] A:2714 [G] 3.64 A:2687 [C] 0.0
O:99 [LYS] A:2715 [G] 3.62 A:2868 [G] 0.0
O:99 [LYS] A:2842 [G] 4.49 A:2866 [C] 0.0
O:99 [LYS] A:2843 [U] 3.18 A:2865 [G] 0.0
O:99 [LYS] A:2844 [G] 4.46 A:2864 [A] 0.0
O:101 [TYR] A:2714 [G] 3.19 A:2687 [C] 0.0
O:101 [TYR] A:2715 [G] 3.26 A:2868 [G] 0.0
O:102 [TYR] A:1750 [C] 3.82 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group61 7RYG_O_A O: 50s ribosomal protein l19, Acinetobacter baumannii (strain ab0057) (natural) A: 23s ribosomal RNA, Acinetobacter baumannii ab0057 (natural) B7IAS9 SH3 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1T_1A 7RYG_O_A 0.68 0.96 3.22 0.33 SH3 Bacterial large subunit ribosomal RNA compare
6S0Z_N_A 7RYG_O_A 0.64 0.98 2.05 0.39 SH3 Bacterial large subunit ribosomal RNA compare