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All interfaces > All interologs > Interface groups > group62 > 4Y4O_1Y_1A

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Licorice
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Licorice
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Chain
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_1Y
4Y4O_1A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1Y:1 [MET] 1A:80 [G] 3.19 1A:103 [C] 41.76
1Y:1 [MET] 1A:81 [G] 4.16 1A:102 [U] 41.76
1Y:1 [MET] 1A:103 [C] 2.88 1A:80 [G] sugar:BB 41.76
1Y:1 [MET] 1A:104 [C] 3.27 1A:79 [G] 41.76
1Y:1 [MET] 1A:318 [A] 4.44 1A:368 [G] 41.76
1Y:1 [MET] 1A:319 [G] 3.45 1A:367 [C] 41.76
1Y:1 [MET] 1A:320 [C] 4.36 1A:366 [G] 41.76
1Y:2 [ARG] 1A:81 [G] 3.75 1A:102 [U] 60.21
1Y:2 [ARG] 1A:82 [G] 3.46 1A:101 [A] 60.21
1Y:2 [ARG] 1A:83 [A] 4.61 1A:100 [G] 60.21
1Y:2 [ARG] 1A:320 [C] 4.86 1A:366 [G] 60.21
1Y:4 [LYS] 1A:320 [C] 3.58 1A:366 [G] 55.56
1Y:4 [LYS] 1A:321 [C] 4.15 1A:365 [G] 55.56
1Y:4 [LYS] 1A:361 [C] 4.07 1A:349 [G] 55.56
1Y:4 [LYS] 1A:362 [G] 2.87 1A:348 [A] 55.56
1Y:5 [MET] 1A:83 [A] 4.25 1A:100 [G] 39.94
1Y:6 [HIS] 1A:360 [C] 4.02 1A:350 [G] 0.0
1Y:6 [HIS] 1A:361 [C] 4.28 1A:349 [G] 0.0
1Y:7 [VAL] 1A:84 [G] 4.39 1A:96 [C] 0.0
1Y:8 [LYS] 1A:83 [A] 3.11 1A:100 [G] 0.0
1Y:8 [LYS] 1A:84 [G] 3.24 1A:96 [C] 0.0
1Y:8 [LYS] 1A:98 [U] 3.01 base:SC 0.0
1Y:9 [LYS] 1A:83 [A] 4.91 1A:100 [G] 0.0
1Y:9 [LYS] 1A:84 [G] 2.92 1A:96 [C] 0.0
1Y:16 [ALA] 1A:334 [A] 4.88 1A:330 [U] 0.0
1Y:17 [SER] 1A:333 [G] 4.68 0.0
1Y:17 [SER] 1A:334 [A] 3.55 1A:330 [U] 0.0
1Y:17 [SER] 1A:353 [G] 4.51 1A:332 [G] 0.0
1Y:18 [GLY] 1A:333 [G] 3.4 0.0
1Y:18 [GLY] 1A:334 [A] 2.93 1A:330 [U] 0.0
1Y:18 [GLY] 1A:353 [G] 3.2 1A:332 [G] 0.0
1Y:19 [LYS] 1A:332 [G] 4.41 1A:353 [G] 0.0
1Y:19 [LYS] 1A:333 [G] 3.67 0.0
1Y:19 [LYS] 1A:353 [G] 2.71 1A:332 [G] base:BB 0.0
1Y:20 [TYR] 1A:353 [G] 4.72 1A:332 [G] 0.0
1Y:21 [LYS] 1A:331 [G] 3.52 1A:354 [A] base:SC 0.0
1Y:21 [LYS] 1A:334 [A] 3.26 1A:330 [U] 0.0
1Y:30 [VAL] 1A:84 [G] 3.31 1A:96 [C] 0.0
1Y:30 [VAL] 1A:85 [C] 4.29 1A:95 [G] 0.0
1Y:32 [PRO] 1A:84 [G] 3.83 1A:96 [C] 48.91
1Y:32 [PRO] 1A:85 [C] 3.72 1A:95 [G] 48.91
1Y:33 [LYS] 1A:85 [C] 3.27 1A:95 [G] 40.94
1Y:33 [LYS] 1A:86 [C] 4.41 1A:94 [G] 40.94
1Y:33 [LYS] 1A:88 [G] 4.45 1A:64 [C] 40.94
1Y:34 [LYS] 1A:504 [A] 4.17 1A:527 [A] 47.43
1Y:34 [LYS] 1A:505 [A] 4.13 1A:501 [U] 47.43
1Y:35 [TYR] 1A:360 [C] 2.42 1A:350 [G] sugar:SC 42.63
1Y:35 [TYR] 1A:361 [C] 3.98 1A:349 [G] 42.63
1Y:43 [ASN] 1A:353 [G] 4.73 1A:332 [G] 0.0
1Y:45 [VAL] 1A:506 [A] 3.78 1A:530 [A] 0.0
1Y:46 [LYS] 1A:506 [A] 2.75 1A:530 [A] sugar:BB 0.0
1Y:46 [LYS] 1A:507 [G] 4.32 1A:534 [C] 0.0
1Y:46 [LYS] 1A:523 [G] 3.37 1A:531 [G] 0.0
1Y:46 [LYS] 1A:524 [U] 3.3 1A:528 [A] 0.0
1Y:47 [LYS] 1A:506 [A] 3.37 1A:530 [A] 0.0
1Y:47 [LYS] 1A:507 [G] 3.41 1A:534 [C] 0.0
1Y:48 [ALA] 1A:506 [A] 4.6 1A:530 [A] 0.0
1Y:48 [ALA] 1A:507 [G] 2.93 1A:534 [C] 0.0
1Y:48 [ALA] 1A:508 [A] 4.18 1A:522 [A] 0.0
1Y:48 [ALA] 1A:509 [A] 3.21 0.0
1Y:49 [VAL] 1A:509 [A] 2.35 sugar:BB 0.0
1Y:50 [ARG] 1A:508 [A] 4.57 1A:522 [A] 0.0
1Y:50 [ARG] 1A:509 [A] 3.22 0.0
1Y:50 [ARG] 1A:510 [C] 4.03 1A:521 [G] 0.0
1Y:51 [VAL] 1A:509 [A] 3.85 0.0
1Y:51 [VAL] 1A:510 [C] 3.18 1A:521 [G] 0.0
1Y:58 [GLY] 1A:509 [A] 3.82 0.0
1Y:59 [GLY] 1A:509 [A] 2.97 sugar:BB 0.0
1Y:60 [PHE] 1A:509 [A] 3.5 base/AA stacks 0.0
1Y:60 [PHE] 1A:523 [G] 3.54 1A:531 [G] 0.0
1Y:63 [LYS] 1A:505 [A] 4.95 1A:501 [U] 0.0
1Y:63 [LYS] 1A:506 [A] 2.9 1A:530 [A] 0.0
1Y:65 [ALA] 1A:504 [A] 4.04 1A:527 [A] 0.0
1Y:66 [PRO] 1A:504 [A] 4.98 1A:527 [A] 0.0
1Y:68 [HIS] 1A:351 [G] 4.02 1A:359 [C] 0.0
1Y:68 [HIS] 1A:352 [U] 3.62 1A:356 [A] 0.0
1Y:68 [HIS] 1A:353 [G] 4.54 1A:332 [G] 0.0
1Y:70 [SER] 1A:351 [G] 3.4 1A:359 [C] base:SC 0.0
1Y:70 [SER] 1A:352 [U] 3.13 1A:356 [A] sugar:SC 0.0
1Y:70 [SER] 1A:359 [C] 2.69 1A:351 [G] sugar:BB 0.0
1Y:70 [SER] 1A:360 [C] 3.28 1A:350 [G] 0.0
1Y:71 [LYS] 1A:352 [U] 3.51 1A:356 [A] 0.0
1Y:71 [LYS] 1A:353 [G] 2.66 1A:332 [G] 0.0
1Y:71 [LYS] 1A:359 [C] 4.94 1A:351 [G] 0.0
1Y:72 [VAL] 1A:359 [C] 4.53 1A:351 [G] 0.0
1Y:73 [ARG] 1A:325 [G] 4.83 1A:340 [C] 0.0
1Y:73 [ARG] 1A:326 [C] 2.59 1A:339 [G] 0.0
1Y:73 [ARG] 1A:359 [C] 3.49 1A:351 [G] 0.0
1Y:84 [ARG] 1A:323 [A] 4.47 0.0
1Y:84 [ARG] 1A:324 [A] 2.97 0.0
1Y:84 [ARG] 1A:325 [G] 2.68 1A:340 [C] 0.0
1Y:84 [ARG] 1A:358 [C] 4.43 1A:341 [G] 0.0
1Y:84 [ARG] 1A:359 [C] 3.81 1A:351 [G] 0.0
1Y:84 [ARG] 1A:360 [C] 3.62 1A:350 [G] 0.0
1Y:85 [VAL] 1A:322 [G] 4.82 1A:364 [A] 0.0
1Y:85 [VAL] 1A:360 [C] 4.61 1A:350 [G] 0.0
1Y:86 [ARG] 1A:322 [G] 3.51 1A:364 [A] 0.0
1Y:86 [ARG] 1A:323 [A] 3.45 0.0
1Y:86 [ARG] 1A:324 [A] 2.65 0.0
1Y:87 [LYS] 1A:82 [G] 4.34 1A:101 [A] 0.0
1Y:87 [LYS] 1A:321 [C] 2.79 1A:365 [G] 0.0
1Y:87 [LYS] 1A:322 [G] 2.94 1A:364 [A] 0.0
1Y:89 [PHE] 1A:320 [C] 4.09 1A:366 [G] 0.0
1Y:89 [PHE] 1A:321 [C] 4.28 1A:365 [G] 0.0
1Y:94 [LYS] 1A:100 [G] 3.88 1A:83 [A] 43.18
1Y:95 [LYS] 1A:81 [G] 4.3 1A:102 [U] 79.52
1Y:95 [LYS] 1A:82 [G] 2.45 1A:101 [A] 79.52
1Y:95 [LYS] 1A:320 [C] 3.18 1A:366 [G] 79.52
1Y:95 [LYS] 1A:321 [C] 2.88 1A:365 [G] 79.52
1Y:97 [ARG] 1A:83 [A] 4.99 1A:100 [G] 0.0
1Y:101 [LYS] 1A:326 [C] 4.04 1A:339 [G] 0.0
1Y:107 [ASP] 1A:83 [A] 4.93 1A:100 [G] 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group62 4Y4O_1Y_1A 1Y: 50s ribosomal protein l24, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) Q5SHP9 SH3 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1Y_1A 6S0Z_S_A 0.75 0.97 2.5 0.51 SH3 Bacterial large subunit ribosomal RNA compare
4Y4O_1Y_1A 7K00_t_a 0.75 0.96 2.35 0.43 SH3 Bacterial large subunit ribosomal RNA compare
4Y4O_1Y_1A 7RYG_T_A 0.64 0.96 2.96 0.39 SH3 Bacterial large subunit ribosomal RNA compare