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All interfaces > All interologs > Interface groups > group62 > 4Y4O_1Y_1A vs 6S0Z_S_A

Interface analysis


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Common contacts -

4Y4O_1Y
4Y4O_1A
6S0Z_S
6S0Z_A
Conserved?
1Y:18 [GLY] 1A:333 [G] S:14 [GLY] A:352 [A] ✔
1Y:18 [GLY] 1A:334 [A] S:14 [GLY] A:353 [A] ✔
1Y:18 [GLY] 1A:353 [G] S:14 [GLY] A:372 [A] ✔
1Y:101 [LYS] 1A:326 [C] S:96 [LYS] A:345 [C] ✔
1Y:89 [PHE] 1A:320 [C] S:85 [PHE] A:339 [A] ✔
1Y:89 [PHE] 1A:321 [C] S:85 [PHE] A:340 [C] ✔
1Y:43 [ASN] 1A:353 [G] S:39 [ASN] A:372 [A] ✔
1Y:51 [VAL] 1A:509 [A] S:47 [PRO] A:529 [A] ✔
1Y:51 [VAL] 1A:510 [C] S:47 [PRO] A:530 [C] ✔
1Y:59 [GLY] 1A:509 [A] S:55 [GLY] A:529 [A] ✔
1Y:21 [LYS] 1A:334 [A] S:17 [LYS] A:353 [A] ✔
1Y:95 [LYS] 1A:81 [G] S:90 [LYS] A:82 [G] ✔
1Y:95 [LYS] 1A:82 [G] S:90 [LYS] A:83 [G] ✔
1Y:95 [LYS] 1A:320 [C] S:90 [LYS] A:339 [A] ✔
1Y:95 [LYS] 1A:321 [C] S:90 [LYS] A:340 [C] ✔
1Y:17 [SER] 1A:333 [G] S:13 [ALA] A:352 [A] ✔
1Y:17 [SER] 1A:334 [A] S:13 [ALA] A:353 [A] ✔
1Y:50 [ARG] 1A:509 [A] S:46 [LYS] A:529 [A] ✔
1Y:50 [ARG] 1A:510 [C] S:46 [LYS] A:530 [C] ✔
1Y:8 [LYS] 1A:83 [A] S:4 [LYS] A:84 [A] ✔
1Y:87 [LYS] 1A:321 [C] S:83 [TYR] A:340 [C] ✔
1Y:87 [LYS] 1A:322 [G] S:83 [TYR] A:341 [G] ✔
1Y:19 [LYS] 1A:332 [G] S:15 [LYS] A:351 [G] ✔
1Y:19 [LYS] 1A:333 [G] S:15 [LYS] A:352 [A] ✔
1Y:19 [LYS] 1A:353 [G] S:15 [LYS] A:372 [A] ✔
1Y:9 [LYS] 1A:84 [G] S:5 [LYS] A:85 [G] ✔
1Y:48 [ALA] 1A:506 [A] S:44 [HIS] A:526 [A] ✔
1Y:48 [ALA] 1A:507 [G] S:44 [HIS] A:527 [G] ✔
1Y:48 [ALA] 1A:508 [A] S:44 [HIS] A:528 [C] ✔
1Y:48 [ALA] 1A:509 [A] S:44 [HIS] A:529 [A] ✔
1Y:32 [PRO] 1A:84 [G] S:28 [PRO] A:85 [G] ✔
1Y:32 [PRO] 1A:85 [C] S:28 [PRO] A:86 [C] ✔
1Y:71 [LYS] 1A:352 [U] S:67 [ASN] A:371 [U] ✔
1Y:71 [LYS] 1A:353 [G] S:67 [ASN] A:372 [A] ✔
1Y:71 [LYS] 1A:359 [C] S:67 [ASN] A:378 [C] ✔
1Y:70 [SER] 1A:351 [G] S:66 [SER] A:370 [G] ✔
1Y:70 [SER] 1A:352 [U] S:66 [SER] A:371 [U] ✔
1Y:70 [SER] 1A:359 [C] S:66 [SER] A:378 [C] ✔
1Y:70 [SER] 1A:360 [C] S:66 [SER] A:379 [C] ✔
1Y:65 [ALA] 1A:504 [A] S:61 [ALA] A:524 [A] ✔
1Y:49 [VAL] 1A:509 [A] S:45 [GLN] A:529 [A] ✔
1Y:60 [PHE] 1A:523 [G] S:56 [ILE] A:543 [G] ✔
1Y:47 [LYS] 1A:506 [A] S:43 [LYS] A:526 [A] ✔
1Y:47 [LYS] 1A:507 [G] S:43 [LYS] A:527 [G] ✔
1Y:58 [GLY] 1A:509 [A] S:54 [GLY] A:529 [A] ✔
1Y:30 [VAL] 1A:84 [G] S:26 [THR] A:85 [G] ✔
1Y:6 [HIS] 1A:360 [C] S:2 [HIS] A:379 [C] ✔
1Y:6 [HIS] 1A:361 [C] S:2 [HIS] A:380 [U] ✔
1Y:46 [LYS] 1A:506 [A] S:42 [LYS] A:526 [A] ✔
1Y:46 [LYS] 1A:507 [G] S:42 [LYS] A:527 [G] ✔
1Y:46 [LYS] 1A:524 [U] S:42 [LYS] A:544 [U] ✔
1Y:33 [LYS] 1A:85 [C] S:29 [LYS] A:86 [C] ✔
1Y:33 [LYS] 1A:86 [C] S:29 [LYS] A:87 [U] ✔
1Y:72 [VAL] 1A:359 [C] S:68 [VAL] A:378 [C] ✔
1Y:84 [ARG] 1A:323 [A] S:80 [ARG] A:342 [A] ✔
1Y:84 [ARG] 1A:324 [A] S:80 [ARG] A:343 [A] ✔
1Y:84 [ARG] 1A:325 [G] S:80 [ARG] A:344 [U] ✔
1Y:84 [ARG] 1A:358 [C] S:80 [ARG] A:377 [U] ✔
1Y:84 [ARG] 1A:359 [C] S:80 [ARG] A:378 [C] ✔
1Y:84 [ARG] 1A:360 [C] S:80 [ARG] A:379 [C] ✔
1Y:68 [HIS] 1A:351 [G] S:64 [HIS] A:370 [G] ✔
1Y:68 [HIS] 1A:352 [U] S:64 [HIS] A:371 [U] ✔
1Y:68 [HIS] 1A:353 [G] S:64 [HIS] A:372 [A] ✔
1Y:86 [ARG] 1A:322 [G] S:82 [GLY] A:341 [G] ✔
1Y:73 [ARG] 1A:326 [C] S:69 [GLN] A:345 [C] ✔
1Y:73 [ARG] 1A:359 [C] S:69 [GLN] A:378 [C] ✔
1Y:45 [VAL] 1A:506 [A] S:41 [MET] A:526 [A] ✔
1Y:16 [ALA] 1A:334 [A] S:12 [ILE] A:353 [A] ✔
1Y:17 [SER] 1A:353 [G] S:13 [ALA] A:372 [A] ❌ 6S0Z_S_A
1Y:50 [ARG] 1A:508 [A] S:46 [LYS] A:528 [C] ❌ 6S0Z_S_A
1Y:8 [LYS] 1A:84 [G] S:4 [LYS] A:85 [G] ❌ 6S0Z_S_A
1Y:87 [LYS] 1A:82 [G] S:83 [TYR] A:83 [G] ❌ 6S0Z_S_A
1Y:9 [LYS] 1A:83 [A] S:5 [LYS] A:84 [A] ❌ 6S0Z_S_A
1Y:60 [PHE] 1A:509 [A] S:56 [ILE] A:529 [A] ❌ 6S0Z_S_A
1Y:30 [VAL] 1A:85 [C] S:26 [THR] A:86 [C] ❌ 6S0Z_S_A
1Y:46 [LYS] 1A:523 [G] S:42 [LYS] A:543 [G] ❌ 6S0Z_S_A
1Y:86 [ARG] 1A:323 [A] S:82 [GLY] A:342 [A] ❌ 6S0Z_S_A
1Y:86 [ARG] 1A:324 [A] S:82 [GLY] A:343 [A] ❌ 6S0Z_S_A
1Y:73 [ARG] 1A:325 [G] S:69 [GLN] A:344 [U] ❌ 6S0Z_S_A
1Y:16 [ALA] 1A:359 [C] S:12 [ILE] A:378 [C] ❌ 4Y4O_1Y_1A
1Y:6 [HIS] 1A:83 [A] S:2 [HIS] A:84 [A] ❌ 4Y4O_1Y_1A
1Y:48 [ALA] 1A:523 [G] S:44 [HIS] A:543 [G] ❌ 4Y4O_1Y_1A
1Y:48 [ALA] 1A:524 [U] S:44 [HIS] A:544 [U] ❌ 4Y4O_1Y_1A
1Y:101 [LYS] 1A:325 [G] S:96 [LYS] A:344 [U] ❌ 4Y4O_1Y_1A
1Y:21 [LYS] 1A:331 [G] S:17 [LYS] A:350 [G] ❌ 6S0Z_A:350 no longer at interface
1Y:63 [LYS] 1A:505 [A] S:59 [THR] A:525 [A] ❌ 6S0Z_S:59, 6S0Z_A:525 no longer at interface
1Y:8 [LYS] 1A:98 [U] S:4 [LYS] A:99 [U] ❌ 6S0Z_A:99 no longer at interface
1Y:94 [LYS] 1A:100 [G] S:89 [LYS] A:101 [G] ❌ 6S0Z_S:89, 6S0Z_A:101 no longer at interface
1Y:33 [LYS] 1A:88 [G] S:29 [LYS] A:89 [U] ❌ 6S0Z_A:89 no longer at interface
1Y:34 [LYS] 1A:505 [A] S:30 [LYS] A:525 [A] ❌ 6S0Z_S:30, 6S0Z_A:525 no longer at interface
1Y:14 [LEU] 1A:327 [U] S:10 [LYS] A:346 [A] ❌ 4Y4O_1Y:14, 4Y4O_1A:327 no longer at interface
1Y:19 [LYS] 1A:526 [A] S:15 [LYS] A:546 [A] ❌ 4Y4O_1A:526 no longer at interface
1Y:36 [ALA] 1A:503 [A] S:32 [ARG] A:523 [A] ❌ 4Y4O_1Y:36, 4Y4O_1A:503 no longer at interface
1Y:46 [LYS] 1A:525 [G] S:42 [LYS] A:545 [G] ❌ 4Y4O_1A:525 no longer at interface
1Y:48 [ALA] 1A:522 [A] S:44 [HIS] A:542 [A] ❌ 4Y4O_1A:522 no longer at interface
1Y:70 [SER] 1A:356 [A] S:66 [SER] A:375 [A] ❌ 4Y4O_1A:356 no longer at interface
1Y:85 [VAL] 1A:322 [G] S:81 [VAL] A:341 [G] ❌ 6S0Z_S:81 no longer at interface
1Y:85 [VAL] 1A:360 [C] S:81 [VAL] A:379 [C] ❌ 6S0Z_S:81 no longer at interface
1Y:20 [TYR] 1A:353 [G] S:16 [ASP] A:372 [A] ❌ 6S0Z_S:16 no longer at interface
1Y:66 [PRO] 1A:504 [A] S:62 [ALA] A:524 [A] ❌ 6S0Z_S:62 no longer at interface
1Y:63 [LYS] 1A:506 [A] S:59 [THR] A:526 [A] ❌ 6S0Z_S:59 no longer at interface
1Y:97 [ARG] 1A:83 [A] S:92 [ARG] A:84 [A] ❌ 6S0Z_S:92 no longer at interface
1Y:35 [TYR] 1A:360 [C] S:31 [ASP] A:379 [C] ❌ 6S0Z_S:31 no longer at interface
1Y:35 [TYR] 1A:361 [C] S:31 [ASP] A:380 [U] ❌ 6S0Z_S:31 no longer at interface
1Y:7 [VAL] 1A:84 [G] S:3 [ILE] A:85 [G] ❌ 6S0Z_S:3 no longer at interface
1Y:107 [ASP] 1A:83 [A] S:102 [LYS] A:84 [A] ❌ 6S0Z_S:102 no longer at interface
1Y:34 [LYS] 1A:504 [A] S:30 [LYS] A:524 [A] ❌ 6S0Z_S:30 no longer at interface
1Y:36 [ALA] 1A:504 [A] S:32 [ARG] A:524 [A] ❌ 4Y4O_1Y:36 no longer at interface
1Y:36 [ALA] 1A:353 [G] S:32 [ARG] A:372 [A] ❌ 4Y4O_1Y:36 no longer at interface
1Y:57 [GLN] 1A:510 [C] S:53 [GLU] A:530 [C] ❌ 4Y4O_1Y:57 no longer at interface
1Y:57 [GLN] 1A:509 [A] S:53 [GLU] A:529 [A] ❌ 4Y4O_1Y:57 no longer at interface
1Y:69 [ALA] 1A:359 [C] S:65 [VAL] A:378 [C] ❌ 4Y4O_1Y:69 no longer at interface
1Y:82 [PRO] 1A:326 [C] S:78 [PRO] A:345 [C] ❌ 4Y4O_1Y:82 no longer at interface
1Y:98 [VAL] 1A:322 [G] S:93 [ILE] A:341 [G] ❌ 4Y4O_1Y:98 no longer at interface
1Y:100 [ALA] 1A:322 [G] S:95 [LYS] A:341 [G] ❌ 4Y4O_1Y:100 no longer at interface
1Y:100 [ALA] 1A:323 [A] S:95 [LYS] A:342 [A] ❌ 4Y4O_1Y:100 no longer at interface
1Y:100 [ALA] 1A:324 [A] S:95 [LYS] A:343 [A] ❌ 4Y4O_1Y:100 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
SH3 Bacterial large subunit ribosomal RNA 0.97 2.5 0.51 0.88 0.97 0.83 0.84 0.75 0.64 0.28 0.67


Other pairs involving 4Y4O_1Y_1A or 6S0Z_S_A

Total number of entries: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1Y_1A 6S0Z_S_A 0.75 0.97 2.5 0.51 SH3 Bacterial large subunit ribosomal RNA compare
6S0Z_S_A 7K00_t_a 0.85 0.97 2.14 0.54 SH3 Bacterial large subunit ribosomal RNA compare
4Y4O_1Y_1A 7K00_t_a 0.75 0.96 2.35 0.43 SH3 Bacterial large subunit ribosomal RNA compare
6S0Z_S_A 7RYG_T_A 0.83 0.98 1.65 0.66 SH3 Bacterial large subunit ribosomal RNA compare
4Y4O_1Y_1A 7RYG_T_A 0.64 0.96 2.96 0.39 SH3 Bacterial large subunit ribosomal RNA compare