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All interfaces > All interologs > Interface groups > group62 > 4Y4O_1Y_1A vs 7RYG_T_A

Interface analysis


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Common contacts -

4Y4O_1Y
4Y4O_1A
7RYG_T
7RYG_A
Conserved?
1Y:18 [GLY] 1A:333 [G] T:15 [GLY] A:311 [G] ✔
1Y:18 [GLY] 1A:334 [A] T:15 [GLY] A:312 [A] ✔
1Y:18 [GLY] 1A:353 [G] T:15 [GLY] A:331 [G] ✔
1Y:66 [PRO] 1A:504 [A] T:62 [SER] A:477 [A] ✔
1Y:51 [VAL] 1A:509 [A] T:46 [PRO] A:482 [A] ✔
1Y:51 [VAL] 1A:510 [C] T:46 [PRO] A:483 [C] ✔
1Y:59 [GLY] 1A:509 [A] T:55 [GLY] A:482 [A] ✔
1Y:21 [LYS] 1A:334 [A] T:18 [LYS] A:312 [A] ✔
1Y:95 [LYS] 1A:81 [G] T:90 [LYS] A:89 [G] ✔
1Y:95 [LYS] 1A:82 [G] T:90 [LYS] A:90 [G] ✔
1Y:95 [LYS] 1A:320 [C] T:90 [LYS] A:298 [U] ✔
1Y:95 [LYS] 1A:321 [C] T:90 [LYS] A:299 [G] ✔
1Y:63 [LYS] 1A:506 [A] T:59 [GLN] A:479 [A] ✔
1Y:17 [SER] 1A:334 [A] T:14 [ALA] A:312 [A] ✔
1Y:50 [ARG] 1A:509 [A] T:45 [LYS] A:482 [A] ✔
1Y:50 [ARG] 1A:510 [C] T:45 [LYS] A:483 [C] ✔
1Y:87 [LYS] 1A:321 [C] T:83 [TYR] A:299 [G] ✔
1Y:87 [LYS] 1A:322 [G] T:83 [TYR] A:300 [G] ✔
1Y:19 [LYS] 1A:333 [G] T:16 [LYS] A:311 [G] ✔
1Y:19 [LYS] 1A:353 [G] T:16 [LYS] A:331 [G] ✔
1Y:9 [LYS] 1A:83 [A] T:5 [LYS] A:91 [A] ✔
1Y:48 [ALA] 1A:506 [A] T:43 [HIS] A:479 [A] ✔
1Y:48 [ALA] 1A:507 [G] T:43 [HIS] A:480 [G] ✔
1Y:48 [ALA] 1A:508 [A] T:43 [HIS] A:481 [A] ✔
1Y:48 [ALA] 1A:509 [A] T:43 [HIS] A:482 [A] ✔
1Y:32 [PRO] 1A:85 [C] T:29 [GLU] A:93 [G] ✔
1Y:71 [LYS] 1A:352 [U] T:67 [ASN] A:330 [U] ✔
1Y:71 [LYS] 1A:353 [G] T:67 [ASN] A:331 [G] ✔
1Y:70 [SER] 1A:351 [G] T:66 [SER] A:329 [G] ✔
1Y:70 [SER] 1A:352 [U] T:66 [SER] A:330 [U] ✔
1Y:70 [SER] 1A:359 [C] T:66 [SER] A:337 [C] ✔
1Y:70 [SER] 1A:360 [C] T:66 [SER] A:338 [C] ✔
1Y:65 [ALA] 1A:504 [A] T:61 [ALA] A:477 [A] ✔
1Y:49 [VAL] 1A:509 [A] T:44 [GLN] A:482 [A] ✔
1Y:60 [PHE] 1A:509 [A] T:56 [ILE] A:482 [A] ✔
1Y:60 [PHE] 1A:523 [G] T:56 [ILE] A:497 [G] ✔
1Y:47 [LYS] 1A:506 [A] T:42 [LYS] A:479 [A] ✔
1Y:47 [LYS] 1A:507 [G] T:42 [LYS] A:480 [G] ✔
1Y:58 [GLY] 1A:509 [A] T:54 [GLY] A:482 [A] ✔
1Y:30 [VAL] 1A:84 [G] T:27 [VAL] A:92 [G] ✔
1Y:30 [VAL] 1A:85 [C] T:27 [VAL] A:93 [G] ✔
1Y:6 [HIS] 1A:360 [C] T:2 [ALA] A:338 [C] ✔
1Y:6 [HIS] 1A:361 [C] T:2 [ALA] A:339 [C] ✔
1Y:46 [LYS] 1A:506 [A] T:41 [LYS] A:479 [A] ✔
1Y:46 [LYS] 1A:507 [G] T:41 [LYS] A:480 [G] ✔
1Y:46 [LYS] 1A:524 [U] T:41 [LYS] A:498 [U] ✔
1Y:72 [VAL] 1A:359 [C] T:68 [VAL] A:337 [C] ✔
1Y:68 [HIS] 1A:351 [G] T:64 [HIS] A:329 [G] ✔
1Y:68 [HIS] 1A:352 [U] T:64 [HIS] A:330 [U] ✔
1Y:68 [HIS] 1A:353 [G] T:64 [HIS] A:331 [G] ✔
1Y:86 [ARG] 1A:322 [G] T:82 [GLY] A:300 [G] ✔
1Y:45 [VAL] 1A:506 [A] T:40 [VAL] A:479 [A] ✔
1Y:16 [ALA] 1A:334 [A] T:13 [ILE] A:312 [A] ✔
1Y:63 [LYS] 1A:505 [A] T:59 [GLN] A:478 [A] ❌ 7RYG_T_A
1Y:17 [SER] 1A:333 [G] T:14 [ALA] A:311 [G] ❌ 7RYG_T_A
1Y:17 [SER] 1A:353 [G] T:14 [ALA] A:331 [G] ❌ 7RYG_T_A
1Y:50 [ARG] 1A:508 [A] T:45 [LYS] A:481 [A] ❌ 7RYG_T_A
1Y:87 [LYS] 1A:82 [G] T:83 [TYR] A:90 [G] ❌ 7RYG_T_A
1Y:9 [LYS] 1A:84 [G] T:5 [LYS] A:92 [G] ❌ 7RYG_T_A
1Y:7 [VAL] 1A:84 [G] T:3 [LYS] A:92 [G] ❌ 7RYG_T_A
1Y:32 [PRO] 1A:84 [G] T:29 [GLU] A:92 [G] ❌ 7RYG_T_A
1Y:71 [LYS] 1A:359 [C] T:67 [ASN] A:337 [C] ❌ 7RYG_T_A
1Y:46 [LYS] 1A:523 [G] T:41 [LYS] A:497 [G] ❌ 7RYG_T_A
1Y:86 [ARG] 1A:323 [A] T:82 [GLY] A:301 [A] ❌ 7RYG_T_A
1Y:86 [ARG] 1A:324 [A] T:82 [GLY] A:302 [A] ❌ 7RYG_T_A
1Y:16 [ALA] 1A:359 [C] T:13 [ILE] A:337 [C] ❌ 4Y4O_1Y_1A
1Y:7 [VAL] 1A:83 [A] T:3 [LYS] A:91 [A] ❌ 4Y4O_1Y_1A
1Y:47 [LYS] 1A:505 [A] T:42 [LYS] A:478 [A] ❌ 4Y4O_1Y_1A
1Y:47 [LYS] 1A:508 [A] T:42 [LYS] A:481 [A] ❌ 4Y4O_1Y_1A
1Y:48 [ALA] 1A:523 [G] T:43 [HIS] A:497 [G] ❌ 4Y4O_1Y_1A
1Y:48 [ALA] 1A:524 [U] T:43 [HIS] A:498 [U] ❌ 4Y4O_1Y_1A
1Y:9 [LYS] 1A:82 [G] T:5 [LYS] A:90 [G] ❌ 4Y4O_1Y_1A
1Y:9 [LYS] 1A:98 [U] T:5 [LYS] A:107 [U] ❌ 4Y4O_1Y_1A
1Y:21 [LYS] 1A:331 [G] T:18 [LYS] A:309 [G] ❌ 7RYG_A:309 no longer at interface
1Y:19 [LYS] 1A:332 [G] T:16 [LYS] A:310 [G] ❌ 7RYG_A:310 no longer at interface
1Y:94 [LYS] 1A:100 [G] T:89 [VAL] A:109 [G] ❌ 7RYG_T:89, 7RYG_A:109 no longer at interface
1Y:19 [LYS] 1A:503 [A] T:16 [LYS] A:476 [A] ❌ 4Y4O_1A:503 no longer at interface
1Y:85 [VAL] 1A:322 [G] T:81 [VAL] A:300 [G] ❌ 7RYG_T:81 no longer at interface
1Y:85 [VAL] 1A:360 [C] T:81 [VAL] A:338 [C] ❌ 7RYG_T:81 no longer at interface
1Y:20 [TYR] 1A:353 [G] T:17 [GLU] A:331 [G] ❌ 7RYG_T:17 no longer at interface
1Y:101 [LYS] 1A:326 [C] T:96 [SER] A:304 [G] ❌ 7RYG_T:96 no longer at interface
1Y:89 [PHE] 1A:320 [C] T:85 [VAL] A:298 [U] ❌ 7RYG_T:85 no longer at interface
1Y:89 [PHE] 1A:321 [C] T:85 [VAL] A:299 [G] ❌ 7RYG_T:85 no longer at interface
1Y:43 [ASN] 1A:353 [G] T:38 [ASN] A:331 [G] ❌ 7RYG_T:38 no longer at interface
1Y:97 [ARG] 1A:83 [A] T:92 [ARG] A:91 [A] ❌ 7RYG_T:92 no longer at interface
1Y:8 [LYS] 1A:83 [A] T:4 [ILE] A:91 [A] ❌ 7RYG_T:4 no longer at interface
1Y:8 [LYS] 1A:84 [G] T:4 [ILE] A:92 [G] ❌ 7RYG_T:4 no longer at interface
1Y:8 [LYS] 1A:98 [U] T:4 [ILE] A:107 [U] ❌ 7RYG_T:4 no longer at interface
1Y:107 [ASP] 1A:83 [A] T:103 [VAL] A:91 [A] ❌ 7RYG_T:103 no longer at interface
1Y:73 [ARG] 1A:325 [G] T:69 [ALA] A:303 [C] ❌ 7RYG_T:69 no longer at interface
1Y:73 [ARG] 1A:326 [C] T:69 [ALA] A:304 [G] ❌ 7RYG_T:69 no longer at interface
1Y:73 [ARG] 1A:359 [C] T:69 [ALA] A:337 [C] ❌ 7RYG_T:69 no longer at interface
1Y:31 [LEU] 1A:85 [C] T:28 [SER] A:93 [G] ❌ 4Y4O_1Y:31 no longer at interface
1Y:37 [VAL] 1A:504 [A] T:31 [ARG] A:477 [A] ❌ 4Y4O_1Y:37 no longer at interface
1Y:56 [PRO] 1A:510 [C] T:53 [GLU] A:483 [C] ❌ 4Y4O_1Y:56 no longer at interface
1Y:56 [PRO] 1A:509 [A] T:53 [GLU] A:482 [A] ❌ 4Y4O_1Y:56 no longer at interface
1Y:10 [GLY] 1A:83 [A] T:6 [LYS] A:91 [A] ❌ 4Y4O_1Y:10 no longer at interface
1Y:10 [GLY] 1A:84 [G] T:6 [LYS] A:92 [G] ❌ 4Y4O_1Y:10 no longer at interface
1Y:69 [ALA] 1A:360 [C] T:65 [ILE] A:338 [C] ❌ 4Y4O_1Y:69 no longer at interface
1Y:81 [LYS] 1A:326 [C] T:78 [ALA] A:304 [G] ❌ 4Y4O_1Y:81 no longer at interface
1Y:83 [THR] 1A:359 [C] T:80 [ARG] A:337 [C] ❌ 4Y4O_1Y:83 no longer at interface
1Y:83 [THR] 1A:325 [G] T:80 [ARG] A:303 [C] ❌ 4Y4O_1Y:83 no longer at interface
1Y:83 [THR] 1A:324 [A] T:80 [ARG] A:302 [A] ❌ 4Y4O_1Y:83 no longer at interface
1Y:83 [THR] 1A:323 [A] T:80 [ARG] A:301 [A] ❌ 4Y4O_1Y:83 no longer at interface
1Y:83 [THR] 1A:358 [C] T:80 [ARG] A:336 [U] ❌ 4Y4O_1Y:83 no longer at interface
1Y:83 [THR] 1A:360 [C] T:80 [ARG] A:338 [C] ❌ 4Y4O_1Y:83 no longer at interface
1Y:100 [ALA] 1A:322 [G] T:95 [LYS] A:300 [G] ❌ 4Y4O_1Y:100 no longer at interface
1Y:100 [ALA] 1A:324 [A] T:95 [LYS] A:302 [A] ❌ 4Y4O_1Y:100 no longer at interface
1Y:100 [ALA] 1A:323 [A] T:95 [LYS] A:301 [A] ❌ 4Y4O_1Y:100 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
SH3 Bacterial large subunit ribosomal RNA 0.96 2.96 0.39 0.85 0.96 0.79 0.97 0.64 0.64 0.41 0.64


Other pairs involving 4Y4O_1Y_1A or 7RYG_T_A

Total number of entries: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0Z_S_A 7RYG_T_A 0.83 0.98 1.65 0.66 SH3 Bacterial large subunit ribosomal RNA compare
4Y4O_1Y_1A 6S0Z_S_A 0.75 0.97 2.5 0.51 SH3 Bacterial large subunit ribosomal RNA compare
4Y4O_1Y_1A 7RYG_T_A 0.64 0.96 2.96 0.39 SH3 Bacterial large subunit ribosomal RNA compare
4Y4O_1Y_1A 7K00_t_a 0.75 0.96 2.35 0.43 SH3 Bacterial large subunit ribosomal RNA compare