Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
4Y4O_1d
|
4Y4O_1a
|
6S0X_d
|
6S0X_a
|
Conserved?
|
---|---|---|---|---|
1d:74 [GLN] | 1a:402 [G] | d:67 [GLN] | a:410 [G] | ✔ |
1d:74 [GLN] | 1a:403 [C] | d:67 [GLN] | a:411 [C] | ✔ |
1d:66 [ARG] | 1a:543 [C] | d:59 [TYR] | a:551 [G] | ✔ |
1d:66 [ARG] | 1a:544 [G] | d:59 [TYR] | a:552 [G] | ✔ |
1d:132 [ARG] | 1a:619 [U] | d:126 [VAL] | a:627 [U] | ✔ |
1d:52 [SER] | 1a:509 [A] | d:45 [SER] | a:517 [A] | ✔ |
1d:71 [SER] | 1a:546 [G] | d:64 [THR] | a:554 [A] | ✔ |
1d:41 [GLY] | 1a:427 [U] | d:35 [GLN] | a:435 [C] | ✔ |
1d:41 [GLY] | 1a:541 [G] | d:35 [GLN] | a:549 [G] | ✔ |
1d:134 [ASP] | 1a:619 [U] | d:128 [ILE] | a:627 [U] | ✔ |
1d:119 [GLN] | 1a:406 [G] | d:112 [GLN] | a:414 [G] | ✔ |
1d:119 [GLN] | 1a:437 [U] | d:112 [GLN] | a:445 [U] | ✔ |
1d:119 [GLN] | 1a:495 [A] | d:112 [GLN] | a:503 [A] | ✔ |
1d:61 [LYS] | 1a:545 [C] | d:54 [LYS] | a:553 [C] | ✔ |
1d:5 [ILE] | 1a:406 [G] | d:6 [GLY] | a:414 [G] | ✔ |
1d:5 [ILE] | 1a:407 [G] | d:6 [GLY] | a:415 [A] | ✔ |
1d:116 [GLN] | 1a:407 [G] | d:109 [GLN] | a:415 [A] | ✔ |
1d:116 [GLN] | 1a:408 [A] | d:109 [GLN] | a:416 [G] | ✔ |
1d:85 [LYS] | 1a:614 [A] | d:77 [LYS] | a:622 [A] | ✔ |
1d:43 [HIS] | 1a:511 [C] | d:36 [HIS] | a:519 [C] | ✔ |
1d:43 [HIS] | 1a:512 [U] | d:36 [HIS] | a:520 [U] | ✔ |
1d:43 [HIS] | 1a:540 [G] | d:36 [HIS] | a:548 [G] | ✔ |
1d:8 [VAL] | 1a:430 [A] | d:9 [TRP] | a:438 [A] | ✔ |
1d:72 [GLU] | 1a:545 [C] | d:65 [GLU] | a:553 [C] | ✔ |
1d:72 [GLU] | 1a:546 [G] | d:65 [GLU] | a:554 [A] | ✔ |
1d:115 [ARG] | 1a:406 [G] | d:108 [ARG] | a:414 [G] | ✔ |
1d:115 [ARG] | 1a:407 [G] | d:108 [ARG] | a:415 [A] | ✔ |
1d:115 [ARG] | 1a:408 [A] | d:108 [ARG] | a:416 [G] | ✔ |
1d:65 [ARG] | 1a:545 [C] | d:58 [ARG] | a:553 [C] | ✔ |
1d:65 [ARG] | 1a:546 [G] | d:58 [ARG] | a:554 [A] | ✔ |
1d:6 [GLY] | 1a:430 [A] | d:7 [SER] | a:438 [A] | ✔ |
1d:157 [LEU] | 1a:436 [C] | d:150 [ILE] | a:444 [C] | ✔ |
1d:133 [VAL] | 1a:619 [U] | d:127 [ASP] | a:627 [U] | ✔ |
1d:156 [GLU] | 1a:436 [C] | d:149 [ASN] | a:444 [C] | ✔ |
1d:139 [ARG] | 1a:620 [C] | d:132 [SER] | a:628 [C] | ✔ |
1d:125 [HIS] | 1a:438 [G] | d:118 [HIS] | a:446 [G] | ✔ |
1d:112 [VAL] | 1a:408 [A] | d:105 [ARG] | a:416 [G] | ✔ |
1d:2 [GLY] | 1a:404 [U] | d:3 [ARG] | a:412 [G] | ✔ |
1d:2 [GLY] | 1a:405 [U] | d:3 [ARG] | a:413 [U] | ✔ |
1d:9 [CYS] | 1a:429 [U] | d:10 [LYS] | a:437 [U] | ✔ |
1d:9 [CYS] | 1a:430 [A] | d:10 [LYS] | a:438 [A] | ✔ |
1d:32 [ALA] | 1a:429 [U] | d:28 [LYS] | a:437 [U] | ✔ |
1d:137 [SER] | 1a:402 [G] | d:130 [SER] | a:410 [G] | ✔ |
1d:137 [SER] | 1a:620 [C] | d:130 [SER] | a:628 [C] | ✔ |
1d:62 [GLN] | 1a:544 [G] | d:55 [GLN] | a:552 [G] | ✔ |
1d:62 [GLN] | 1a:545 [C] | d:55 [GLN] | a:553 [C] | ✔ |
1d:30 [LYS] | 1a:412 [A] | d:27 [GLU] | a:420 [U] | ✔ |
1d:4 [TYR] | 1a:546 [G] | d:5 [ARG] | a:554 [A] | ✔ |
1d:155 [LEU] | 1a:436 [C] | d:148 [LEU] | a:444 [C] | ✔ |
1d:155 [LEU] | 1a:437 [U] | d:148 [LEU] | a:445 [U] | ✔ |
1d:122 [ARG] | 1a:403 [C] | d:115 [ASN] | a:411 [C] | ✔ |
1d:122 [ARG] | 1a:404 [U] | d:115 [ASN] | a:412 [G] | ✔ |
1d:138 [TYR] | 1a:619 [U] | d:131 [TYR] | a:627 [U] | ✔ |
1d:138 [TYR] | 1a:620 [C] | d:131 [TYR] | a:628 [C] | ✔ |
1d:135 [LEU] | 1a:403 [C] | d:129 [PRO] | a:411 [C] | ✔ |
1d:113 [SER] | 1a:407 [G] | d:106 [THR] | a:415 [A] | ✔ |
1d:113 [SER] | 1a:408 [A] | d:106 [THR] | a:416 [G] | ✔ |
1d:118 [ARG] | 1a:403 [C] | d:111 [ARG] | a:411 [C] | ✔ |
1d:118 [ARG] | 1a:404 [U] | d:111 [ARG] | a:412 [G] | ✔ |
1d:73 [ARG] | 1a:400 [C] | d:66 [ARG] | a:408 [C] | ✔ |
1d:73 [ARG] | 1a:401 [C] | d:66 [ARG] | a:409 [C] | ✔ |
1d:73 [ARG] | 1a:546 [G] | d:66 [ARG] | a:554 [A] | ✔ |
1d:58 [LEU] | 1a:544 [G] | d:51 [LEU] | a:552 [G] | ✔ |
1d:40 [PRO] | 1a:426 [G] | d:34 [GLY] | a:434 [U] | ✔ |
1d:40 [PRO] | 1a:427 [U] | d:34 [GLY] | a:435 [C] | ✔ |
1d:123 [HIS] | 1a:437 [U] | d:116 [HIS] | a:445 [U] | ✔ |
1d:123 [HIS] | 1a:438 [G] | d:116 [HIS] | a:446 [G] | ✔ |
1d:132 [ARG] | 1a:489 [C] | d:126 [VAL] | a:497 [C] | ❌ 6S0X_d_a |
1d:132 [ARG] | 1a:490 [G] | d:126 [VAL] | a:498 [U] | ❌ 6S0X_d_a |
1d:41 [GLY] | 1a:426 [G] | d:35 [GLN] | a:434 [U] | ❌ 6S0X_d_a |
1d:41 [GLY] | 1a:542 [G] | d:35 [GLN] | a:550 [U] | ❌ 6S0X_d_a |
1d:119 [GLN] | 1a:405 [U] | d:112 [GLN] | a:413 [U] | ❌ 6S0X_d_a |
1d:119 [GLN] | 1a:407 [G] | d:112 [GLN] | a:415 [A] | ❌ 6S0X_d_a |
1d:61 [LYS] | 1a:544 [G] | d:54 [LYS] | a:552 [G] | ❌ 6S0X_d_a |
1d:5 [ILE] | 1a:405 [U] | d:6 [GLY] | a:413 [U] | ❌ 6S0X_d_a |
1d:43 [HIS] | 1a:541 [G] | d:36 [HIS] | a:549 [G] | ❌ 6S0X_d_a |
1d:156 [GLU] | 1a:437 [U] | d:149 [ASN] | a:445 [U] | ❌ 6S0X_d_a |
1d:13 [ARG] | 1a:426 [G] | d:14 [ARG] | a:434 [U] | ❌ 6S0X_d_a |
1d:13 [ARG] | 1a:427 [U] | d:14 [ARG] | a:435 [C] | ❌ 6S0X_d_a |
1d:13 [ARG] | 1a:428 [G] | d:14 [ARG] | a:436 [G] | ❌ 6S0X_d_a |
1d:13 [ARG] | 1a:429 [U] | d:14 [ARG] | a:437 [U] | ❌ 6S0X_d_a |
1d:125 [HIS] | 1a:437 [U] | d:118 [HIS] | a:445 [U] | ❌ 6S0X_d_a |
1d:2 [GLY] | 1a:499 [A] | d:3 [ARG] | a:507 [A] | ❌ 6S0X_d_a |
1d:2 [GLY] | 1a:546 [G] | d:3 [ARG] | a:554 [A] | ❌ 6S0X_d_a |
1d:137 [SER] | 1a:403 [C] | d:130 [SER] | a:411 [C] | ❌ 6S0X_d_a |
1d:62 [GLN] | 1a:543 [C] | d:55 [GLN] | a:551 [G] | ❌ 6S0X_d_a |
1d:30 [LYS] | 1a:409 [G] | d:27 [GLU] | a:417 [U] | ❌ 6S0X_d_a |
1d:30 [LYS] | 1a:410 [G] | d:27 [GLU] | a:418 [G] | ❌ 6S0X_d_a |
1d:122 [ARG] | 1a:619 [U] | d:115 [ASN] | a:627 [U] | ❌ 6S0X_d_a |
1d:135 [LEU] | 1a:402 [G] | d:129 [PRO] | a:410 [G] | ❌ 6S0X_d_a |
1d:135 [LEU] | 1a:619 [U] | d:129 [PRO] | a:627 [U] | ❌ 6S0X_d_a |
1d:135 [LEU] | 1a:620 [C] | d:129 [PRO] | a:628 [C] | ❌ 6S0X_d_a |
1d:49 [ARG] | 1a:510 [A] | d:42 [LYS] | a:518 [A] | ❌ 6S0X_d_a |
1d:49 [ARG] | 1a:511 [C] | d:42 [LYS] | a:519 [C] | ❌ 6S0X_d_a |
1d:73 [ARG] | 1a:545 [C] | d:66 [ARG] | a:553 [C] | ❌ 6S0X_d_a |
1d:58 [LEU] | 1a:509 [A] | d:51 [LEU] | a:517 [A] | ❌ 6S0X_d_a |
1d:58 [LEU] | 1a:543 [C] | d:51 [LEU] | a:551 [G] | ❌ 6S0X_d_a |
1d:40 [PRO] | 1a:542 [G] | d:34 [GLY] | a:550 [U] | ❌ 6S0X_d_a |
1d:40 [PRO] | 1a:543 [C] | d:34 [GLY] | a:551 [G] | ❌ 6S0X_d_a |
1d:123 [HIS] | 1a:439 [A] | d:116 [HIS] | a:448 [U] | ❌ 6S0X_d_a |
1d:123 [HIS] | 1a:495 [A] | d:116 [HIS] | a:503 [A] | ❌ 6S0X_d_a |
1d:9 [CYS] | 1a:428 [G] | d:10 [LYS] | a:436 [G] | ❌ 4Y4O_1d_1a |
1d:116 [GLN] | 1a:436 [C] | d:109 [GLN] | a:444 [C] | ❌ 4Y4O_1d_1a |
1d:116 [GLN] | 1a:437 [U] | d:109 [GLN] | a:445 [U] | ❌ 4Y4O_1d_1a |
1d:119 [GLN] | 1a:438 [G] | d:112 [GLN] | a:446 [G] | ❌ 4Y4O_1d_1a |
1d:122 [ARG] | 1a:439 [A] | d:115 [ASN] | a:448 [U] | ❌ 4Y4O_1d_1a |
1d:134 [ASP] | 1a:402 [G] | d:128 [ILE] | a:410 [G] | ❌ 4Y4O_1d_1a |
1d:134 [ASP] | 1a:403 [C] | d:128 [ILE] | a:411 [C] | ❌ 4Y4O_1d_1a |
1d:134 [ASP] | 1a:620 [C] | d:128 [ILE] | a:628 [C] | ❌ 4Y4O_1d_1a |
1d:13 [ARG] | 1a:543 [C] | d:14 [ARG] | a:551 [G] | ❌ 4Y4O_1d_1a |
1d:13 [ARG] | 1a:544 [G] | d:14 [ARG] | a:552 [G] | ❌ 4Y4O_1d_1a |
1d:13 [ARG] | 1a:542 [G] | d:14 [ARG] | a:550 [U] | ❌ 4Y4O_1d_1a |
1d:157 [LEU] | 1a:437 [U] | d:150 [ILE] | a:445 [U] | ❌ 4Y4O_1d_1a |
1d:30 [LYS] | 1a:429 [U] | d:27 [GLU] | a:437 [U] | ❌ 4Y4O_1d_1a |
1d:32 [ALA] | 1a:426 [G] | d:28 [LYS] | a:434 [U] | ❌ 4Y4O_1d_1a |
1d:32 [ALA] | 1a:412 [A] | d:28 [LYS] | a:420 [U] | ❌ 4Y4O_1d_1a |
1d:32 [ALA] | 1a:425 [G] | d:28 [LYS] | a:433 [A] | ❌ 4Y4O_1d_1a |
1d:40 [PRO] | 1a:541 [G] | d:34 [GLY] | a:549 [G] | ❌ 4Y4O_1d_1a |
1d:41 [GLY] | 1a:418 [C] | d:35 [GLN] | a:426 [U] | ❌ 4Y4O_1d_1a |
1d:41 [GLY] | 1a:511 [C] | d:35 [GLN] | a:519 [C] | ❌ 4Y4O_1d_1a |
1d:41 [GLY] | 1a:540 [G] | d:35 [GLN] | a:548 [G] | ❌ 4Y4O_1d_1a |
1d:43 [HIS] | 1a:510 [A] | d:36 [HIS] | a:518 [A] | ❌ 4Y4O_1d_1a |
1d:49 [ARG] | 1a:509 [A] | d:42 [LYS] | a:517 [A] | ❌ 4Y4O_1d_1a |
1d:49 [ARG] | 1a:507 [C] | d:42 [LYS] | a:515 [C] | ❌ 4Y4O_1d_1a |
1d:4 [TYR] | 1a:406 [G] | d:5 [ARG] | a:414 [G] | ❌ 4Y4O_1d_1a |
1d:4 [TYR] | 1a:405 [U] | d:5 [ARG] | a:413 [U] | ❌ 4Y4O_1d_1a |
1d:4 [TYR] | 1a:404 [U] | d:5 [ARG] | a:412 [G] | ❌ 4Y4O_1d_1a |
1d:4 [TYR] | 1a:499 [A] | d:5 [ARG] | a:507 [A] | ❌ 4Y4O_1d_1a |
1d:4 [TYR] | 1a:407 [G] | d:5 [ARG] | a:415 [A] | ❌ 4Y4O_1d_1a |
1d:66 [ARG] | 1a:545 [C] | d:59 [TYR] | a:553 [C] | ❌ 4Y4O_1d_1a |
1d:73 [ARG] | 1a:402 [G] | d:66 [ARG] | a:410 [G] | ❌ 4Y4O_1d_1a |
1d:6 [GLY] | 1a:408 [A] | d:7 [SER] | a:416 [G] | ❌ 4Y4O_1d_1a |
1d:6 [GLY] | 1a:407 [G] | d:7 [SER] | a:415 [A] | ❌ 4Y4O_1d_1a |
1d:8 [VAL] | 1a:429 [U] | d:9 [TRP] | a:437 [U] | ❌ 4Y4O_1d_1a |
1d:8 [VAL] | 1a:408 [A] | d:9 [TRP] | a:416 [G] | ❌ 4Y4O_1d_1a |
1d:8 [VAL] | 1a:410 [G] | d:9 [TRP] | a:418 [G] | ❌ 4Y4O_1d_1a |
1d:8 [VAL] | 1a:409 [G] | d:9 [TRP] | a:417 [U] | ❌ 4Y4O_1d_1a |
1d:76 [ARG] | 1a:28 [G] | d:69 [ARG] | a:29 [G] | ❌ 6S0X_d:69, 6S0X_a:29 no longer at interface |
1d:132 [ARG] | 1a:488 [C] | d:126 [VAL] | a:496 [C] | ❌ 6S0X_a:496 no longer at interface |
1d:205 [GLU] | 1a:8 [A] | d:196 [GLU] | a:9 [A] | ❌ 6S0X_d:196, 6S0X_a:9 no longer at interface |
1d:141 [ARG] | 1a:615 [C] | d:134 [LYS] | a:623 [C] | ❌ 6S0X_d:134, 6S0X_a:623 no longer at interface |
1d:141 [ARG] | 1a:616 [G] | d:134 [LYS] | a:624 [G] | ❌ 6S0X_d:134, 6S0X_a:624 no longer at interface |
1d:85 [LYS] | 1a:613 [C] | d:77 [LYS] | a:621 [C] | ❌ 6S0X_a:621 no longer at interface |
1d:3 [ARG] | 1a:547 [A] | d:4 [PHE] | a:555 [A] | ❌ 6S0X_d:4, 6S0X_a:555 no longer at interface |
1d:208 [SER] | 1a:8 [A] | d:199 [SER] | a:9 [A] | ❌ 6S0X_d:199, 6S0X_a:9 no longer at interface |
1d:35 [ARG] | 1a:411 [A] | d:29 [ARG] | a:419 [A] | ❌ 6S0X_d:29, 6S0X_a:419 no longer at interface |
1d:35 [ARG] | 1a:413 [G] | d:29 [ARG] | a:421 [G] | ❌ 6S0X_d:29, 6S0X_a:421 no longer at interface |
1d:57 [ARG] | 1a:8 [A] | d:50 [GLN] | a:9 [A] | ❌ 6S0X_d:50, 6S0X_a:9 no longer at interface |
1d:54 [TYR] | 1a:508 [C] | d:47 [TYR] | a:516 [U] | ❌ 6S0X_d:47, 6S0X_a:516 no longer at interface |
1d:84 [LYS] | 1a:613 [C] | d:76 [GLY] | a:621 [C] | ❌ 6S0X_d:76, 6S0X_a:621 no longer at interface |
1d:2 [GLY] | 1a:547 [A] | d:3 [ARG] | a:555 [A] | ❌ 6S0X_a:555 no longer at interface |
1d:87 [GLY] | 1a:5 [U] | d:79 [PHE] | a:6 [U] | ❌ 6S0X_d:79, 6S0X_a:6 no longer at interface |
1d:30 [LYS] | 1a:411 [A] | d:27 [GLU] | a:419 [A] | ❌ 6S0X_a:419 no longer at interface |
1d:36 [ARG] | 1a:413 [G] | d:30 [PRO] | a:421 [G] | ❌ 6S0X_d:30, 6S0X_a:421 no longer at interface |
1d:209 [ARG] | 1a:8 [A] | d:200 [ARG] | a:9 [A] | ❌ 6S0X_d:200, 6S0X_a:9 no longer at interface |
1d:209 [ARG] | 1a:26 [A] | d:200 [ARG] | a:27 [A] | ❌ 6S0X_d:200, 6S0X_a:27 no longer at interface |
1d:209 [ARG] | 1a:27 [G] | d:200 [ARG] | a:28 [G] | ❌ 6S0X_d:200, 6S0X_a:28 no longer at interface |
1d:209 [ARG] | 1a:508 [C] | d:200 [ARG] | a:516 [U] | ❌ 6S0X_d:200, 6S0X_a:516 no longer at interface |
1d:206 [PHE] | 1a:8 [A] | d:197 [TYR] | a:9 [A] | ❌ 6S0X_d:197, 6S0X_a:9 no longer at interface |
1d:73 [ARG] | 1a:549 [C] | d:66 [ARG] | a:557 [C] | ❌ 6S0X_a:557 no longer at interface |
1d:149 [ALA] | 1a:491 [G] | d:142 [ARG] | a:499 [A] | ❌ 4Y4O_1d:149, 4Y4O_1a:491 no longer at interface |
1d:151 [LYS] | 1a:491 [G] | d:144 [LYS] | a:499 [A] | ❌ 4Y4O_1d:151, 4Y4O_1a:491 no longer at interface |
1d:151 [LYS] | 1a:492 [G] | d:144 [LYS] | a:500 [A] | ❌ 4Y4O_1d:151, 4Y4O_1a:492 no longer at interface |
1d:156 [GLU] | 1a:435 [C] | d:149 [ASN] | a:443 [U] | ❌ 4Y4O_1a:435 no longer at interface |
1d:77 [ASN] | 1a:401 [C] | d:70 [ASN] | a:409 [C] | ❌ 6S0X_d:70 no longer at interface |
1d:77 [ASN] | 1a:402 [G] | d:70 [ASN] | a:410 [G] | ❌ 6S0X_d:70 no longer at interface |
1d:10 [ARG] | 1a:427 [U] | d:11 [LYS] | a:435 [C] | ❌ 6S0X_d:11 no longer at interface |
1d:10 [ARG] | 1a:428 [G] | d:11 [LYS] | a:436 [G] | ❌ 6S0X_d:11 no longer at interface |
1d:10 [ARG] | 1a:429 [U] | d:11 [LYS] | a:437 [U] | ❌ 6S0X_d:11 no longer at interface |
1d:10 [ARG] | 1a:430 [A] | d:11 [LYS] | a:438 [A] | ❌ 6S0X_d:11 no longer at interface |
1d:10 [ARG] | 1a:541 [G] | d:11 [LYS] | a:549 [G] | ❌ 6S0X_d:11 no longer at interface |
1d:10 [ARG] | 1a:542 [G] | d:11 [LYS] | a:550 [U] | ❌ 6S0X_d:11 no longer at interface |
1d:10 [ARG] | 1a:543 [C] | d:11 [LYS] | a:551 [G] | ❌ 6S0X_d:11 no longer at interface |
1d:21 [LEU] | 1a:408 [A] | d:19 [LEU] | a:416 [G] | ❌ 6S0X_d:19 no longer at interface |
1d:3 [ARG] | 1a:404 [U] | d:4 [PHE] | a:412 [G] | ❌ 6S0X_d:4 no longer at interface |
1d:3 [ARG] | 1a:405 [U] | d:4 [PHE] | a:413 [U] | ❌ 6S0X_d:4 no longer at interface |
1d:3 [ARG] | 1a:406 [G] | d:4 [PHE] | a:414 [G] | ❌ 6S0X_d:4 no longer at interface |
1d:3 [ARG] | 1a:407 [G] | d:4 [PHE] | a:415 [A] | ❌ 6S0X_d:4 no longer at interface |
1d:55 [ALA] | 1a:509 [A] | d:48 [GLY] | a:517 [A] | ❌ 6S0X_d:48 no longer at interface |
1d:55 [ALA] | 1a:510 [A] | d:48 [GLY] | a:518 [A] | ❌ 6S0X_d:48 no longer at interface |
1d:22 [LYS] | 1a:408 [A] | d:20 [SER] | a:416 [G] | ❌ 6S0X_d:20 no longer at interface |
1d:22 [LYS] | 1a:409 [G] | d:20 [SER] | a:417 [U] | ❌ 6S0X_d:20 no longer at interface |
1d:22 [LYS] | 1a:410 [G] | d:20 [SER] | a:418 [G] | ❌ 6S0X_d:20 no longer at interface |
1d:22 [LYS] | 1a:429 [U] | d:20 [SER] | a:437 [U] | ❌ 6S0X_d:20 no longer at interface |
1d:22 [LYS] | 1a:430 [A] | d:20 [SER] | a:438 [A] | ❌ 6S0X_d:20 no longer at interface |
1d:26 [CYS] | 1a:409 [G] | d:23 [GLY] | a:417 [U] | ❌ 6S0X_d:23 no longer at interface |
1d:38 [TYR] | 1a:425 [G] | d:32 [ALA] | a:433 [A] | ❌ 6S0X_d:32 no longer at interface |
1d:38 [TYR] | 1a:426 [G] | d:32 [ALA] | a:434 [U] | ❌ 6S0X_d:32 no longer at interface |
1d:59 [ARG] | 1a:509 [A] | d:52 [ARG] | a:517 [A] | ❌ 6S0X_d:52 no longer at interface |
1d:59 [ARG] | 1a:543 [C] | d:52 [ARG] | a:551 [G] | ❌ 6S0X_d:52 no longer at interface |
1d:59 [ARG] | 1a:544 [G] | d:52 [ARG] | a:552 [G] | ❌ 6S0X_d:52 no longer at interface |
1d:35 [ARG] | 1a:412 [A] | d:29 [ARG] | a:420 [U] | ❌ 6S0X_d:29 no longer at interface |
1d:54 [TYR] | 1a:509 [A] | d:47 [TYR] | a:517 [A] | ❌ 6S0X_d:47 no longer at interface |
1d:152 [SER] | 1a:438 [G] | d:145 [SER] | a:446 [G] | ❌ 6S0X_d:145 no longer at interface |
1d:45 [GLN] | 1a:425 [G] | d:38 [PRO] | a:433 [A] | ❌ 6S0X_d:38 no longer at interface |
1d:45 [GLN] | 1a:426 [G] | d:38 [PRO] | a:434 [U] | ❌ 6S0X_d:38 no longer at interface |
1d:7 [PRO] | 1a:428 [G] | d:8 [ASN] | a:436 [G] | ❌ 6S0X_d:8 no longer at interface |
1d:7 [PRO] | 1a:430 [A] | d:8 [ASN] | a:438 [A] | ❌ 6S0X_d:8 no longer at interface |
1d:24 [GLU] | 1a:408 [A] | d:22 [THR] | a:416 [G] | ❌ 6S0X_d:22 no longer at interface |
1d:24 [GLU] | 1a:409 [G] | d:22 [THR] | a:417 [U] | ❌ 6S0X_d:22 no longer at interface |
1d:36 [ARG] | 1a:412 [A] | d:30 [PRO] | a:420 [U] | ❌ 6S0X_d:30 no longer at interface |
1d:36 [ARG] | 1a:426 [G] | d:30 [PRO] | a:434 [U] | ❌ 6S0X_d:30 no longer at interface |
1d:36 [ARG] | 1a:427 [U] | d:30 [PRO] | a:435 [C] | ❌ 6S0X_d:30 no longer at interface |
1d:36 [ARG] | 1a:428 [G] | d:30 [PRO] | a:436 [G] | ❌ 6S0X_d:30 no longer at interface |
1d:36 [ARG] | 1a:429 [U] | d:30 [PRO] | a:437 [U] | ❌ 6S0X_d:30 no longer at interface |
1d:23 [GLY] | 1a:409 [G] | d:21 [GLY] | a:417 [U] | ❌ 6S0X_d:21 no longer at interface |
1d:46 [LYS] | 1a:511 [C] | d:39 [ASN] | a:519 [C] | ❌ 6S0X_d:39 no longer at interface |
1d:46 [LYS] | 1a:512 [U] | d:39 [ASN] | a:520 [U] | ❌ 6S0X_d:39 no longer at interface |
1d:209 [ARG] | 1a:507 [C] | d:200 [ARG] | a:515 [C] | ❌ 6S0X_d:200 no longer at interface |
1d:120 [LEU] | 1a:438 [G] | d:113 [LEU] | a:446 [G] | ❌ 4Y4O_1d:120 no longer at interface |
1d:120 [LEU] | 1a:437 [U] | d:113 [LEU] | a:445 [U] | ❌ 4Y4O_1d:120 no longer at interface |
1d:131 [ARG] | 1a:489 [C] | d:125 [ARG] | a:497 [C] | ❌ 4Y4O_1d:131 no longer at interface |
1d:131 [ARG] | 1a:490 [G] | d:125 [ARG] | a:498 [U] | ❌ 4Y4O_1d:131 no longer at interface |
1d:12 [CYS] | 1a:429 [U] | d:13 [ARG] | a:437 [U] | ❌ 4Y4O_1d:12 no longer at interface |
1d:39 [PRO] | 1a:426 [G] | d:33 [PRO] | a:434 [U] | ❌ 4Y4O_1d:39 no longer at interface |
1d:39 [PRO] | 1a:427 [U] | d:33 [PRO] | a:435 [C] | ❌ 4Y4O_1d:39 no longer at interface |
1d:51 [PRO] | 1a:509 [A] | d:44 [LEU] | a:517 [A] | ❌ 4Y4O_1d:51 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Alpha-L RNA-binding motif | Bacterial small subunit ribosomal RNA | 0.95 | 4.96 | 0.39 | 0.88 | 0.95 | 0.84 | 0.91 | 0.36 | 0.25 | 0.09 | 0.53 |
Other pairs involving 4Y4O_1d_1a or 6S0X_d_a
Total number of entries: 5
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
4Y4O_1d_1a | 6S0X_d_a | 0.36 | 0.95 | 4.96 | 0.39 | Alpha-L RNA-binding motif | Bacterial small subunit ribosomal RNA | compare |
6S0X_d_a | 7K00_D_A | 0.35 | 0.95 | 4.88 | 0.37 | Alpha-L RNA-binding motif | Bacterial small subunit ribosomal RNA | compare |
4Y4O_1d_1a | 7K00_D_A | 0.73 | 0.98 | 1.52 | 0.45 | Alpha-L RNA-binding motif | Bacterial small subunit ribosomal RNA | compare |
6S0X_d_a | 7RYG_d_a | 0.58 | 0.96 | 2.24 | 0.49 | Alpha-L RNA-binding motif | Bacterial small subunit ribosomal RNA | compare |
4Y4O_1d_1a | 7RYG_d_a | 0.61 | 0.91 | 4.08 | 0.44 | Alpha-L RNA-binding motif | Bacterial small subunit ribosomal RNA | compare |