Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
4Y4O_1d
|
4Y4O_1a
|
7RYG_d
|
7RYG_a
|
Conserved?
|
---|---|---|---|---|
1d:74 [GLN] | 1a:402 [G] | d:73 [GLN] | a:398 [G] | ✔ |
1d:74 [GLN] | 1a:403 [C] | d:73 [GLN] | a:399 [C] | ✔ |
1d:66 [ARG] | 1a:544 [G] | d:65 [ARG] | a:541 [G] | ✔ |
1d:132 [ARG] | 1a:619 [U] | d:132 [VAL] | a:616 [U] | ✔ |
1d:77 [ASN] | 1a:401 [C] | d:76 [ASN] | a:397 [C] | ✔ |
1d:77 [ASN] | 1a:402 [G] | d:76 [ASN] | a:398 [G] | ✔ |
1d:52 [SER] | 1a:509 [A] | d:51 [SER] | a:506 [A] | ✔ |
1d:71 [SER] | 1a:546 [G] | d:70 [LEU] | a:543 [G] | ✔ |
1d:41 [GLY] | 1a:426 [G] | d:41 [GLN] | a:422 [U] | ✔ |
1d:41 [GLY] | 1a:541 [G] | d:41 [GLN] | a:538 [G] | ✔ |
1d:134 [ASP] | 1a:619 [U] | d:134 [ILE] | a:616 [U] | ✔ |
1d:205 [GLU] | 1a:8 [A] | d:204 [GLU] | a:10 [A] | ✔ |
1d:119 [GLN] | 1a:406 [G] | d:118 [GLN] | a:402 [G] | ✔ |
1d:119 [GLN] | 1a:407 [G] | d:118 [GLN] | a:403 [U] | ✔ |
1d:119 [GLN] | 1a:437 [U] | d:118 [GLN] | a:433 [U] | ✔ |
1d:61 [LYS] | 1a:544 [G] | d:60 [LYS] | a:541 [G] | ✔ |
1d:61 [LYS] | 1a:545 [C] | d:60 [LYS] | a:542 [C] | ✔ |
1d:5 [ILE] | 1a:405 [U] | d:5 [ILE] | a:401 [U] | ✔ |
1d:5 [ILE] | 1a:406 [G] | d:5 [ILE] | a:402 [G] | ✔ |
1d:5 [ILE] | 1a:407 [G] | d:5 [ILE] | a:403 [U] | ✔ |
1d:116 [GLN] | 1a:407 [G] | d:115 [GLU] | a:403 [U] | ✔ |
1d:116 [GLN] | 1a:408 [A] | d:115 [GLU] | a:404 [G] | ✔ |
1d:43 [HIS] | 1a:511 [C] | d:42 [HIS] | a:508 [C] | ✔ |
1d:43 [HIS] | 1a:512 [U] | d:42 [HIS] | a:509 [U] | ✔ |
1d:43 [HIS] | 1a:540 [G] | d:42 [HIS] | a:537 [G] | ✔ |
1d:10 [ARG] | 1a:427 [U] | d:10 [LYS] | a:423 [U] | ✔ |
1d:10 [ARG] | 1a:428 [G] | d:10 [LYS] | a:424 [G] | ✔ |
1d:10 [ARG] | 1a:429 [U] | d:10 [LYS] | a:425 [U] | ✔ |
1d:10 [ARG] | 1a:542 [G] | d:10 [LYS] | a:539 [G] | ✔ |
1d:8 [VAL] | 1a:430 [A] | d:8 [LYS] | a:426 [A] | ✔ |
1d:14 [ARG] | 1a:542 [G] | d:14 [ARG] | a:539 [G] | ✔ |
1d:14 [ARG] | 1a:543 [C] | d:14 [ARG] | a:540 [U] | ✔ |
1d:3 [ARG] | 1a:404 [U] | d:3 [ARG] | a:400 [G] | ✔ |
1d:3 [ARG] | 1a:405 [U] | d:3 [ARG] | a:401 [U] | ✔ |
1d:3 [ARG] | 1a:406 [G] | d:3 [ARG] | a:402 [G] | ✔ |
1d:3 [ARG] | 1a:407 [G] | d:3 [ARG] | a:403 [U] | ✔ |
1d:3 [ARG] | 1a:547 [A] | d:3 [ARG] | a:544 [A] | ✔ |
1d:72 [GLU] | 1a:545 [C] | d:71 [GLU] | a:542 [C] | ✔ |
1d:72 [GLU] | 1a:546 [G] | d:71 [GLU] | a:543 [G] | ✔ |
1d:208 [SER] | 1a:8 [A] | d:207 [SER] | a:10 [A] | ✔ |
1d:55 [ALA] | 1a:509 [A] | d:54 [SER] | a:506 [A] | ✔ |
1d:115 [ARG] | 1a:407 [G] | d:114 [ALA] | a:403 [U] | ✔ |
1d:115 [ARG] | 1a:408 [A] | d:114 [ALA] | a:404 [G] | ✔ |
1d:22 [LYS] | 1a:408 [A] | d:21 [LEU] | a:404 [G] | ✔ |
1d:65 [ARG] | 1a:545 [C] | d:64 [ARG] | a:542 [C] | ✔ |
1d:65 [ARG] | 1a:546 [G] | d:64 [ARG] | a:543 [G] | ✔ |
1d:157 [LEU] | 1a:436 [C] | d:156 [ARG] | a:432 [C] | ✔ |
1d:133 [VAL] | 1a:619 [U] | d:133 [ASN] | a:616 [U] | ✔ |
1d:13 [ARG] | 1a:427 [U] | d:13 [ARG] | a:423 [U] | ✔ |
1d:13 [ARG] | 1a:428 [G] | d:13 [ARG] | a:424 [G] | ✔ |
1d:13 [ARG] | 1a:429 [U] | d:13 [ARG] | a:425 [U] | ✔ |
1d:59 [ARG] | 1a:544 [G] | d:58 [ARG] | a:541 [G] | ✔ |
1d:57 [ARG] | 1a:8 [A] | d:56 [GLN] | a:10 [A] | ✔ |
1d:54 [TYR] | 1a:509 [A] | d:53 [TYR] | a:506 [A] | ✔ |
1d:84 [LYS] | 1a:613 [C] | d:83 [ARG] | a:610 [C] | ✔ |
1d:112 [VAL] | 1a:408 [A] | d:112 [THR] | a:404 [G] | ✔ |
1d:2 [GLY] | 1a:404 [U] | d:2 [ALA] | a:400 [G] | ✔ |
1d:2 [GLY] | 1a:405 [U] | d:2 [ALA] | a:401 [U] | ✔ |
1d:2 [GLY] | 1a:499 [A] | d:2 [ALA] | a:496 [A] | ✔ |
1d:2 [GLY] | 1a:546 [G] | d:2 [ALA] | a:543 [G] | ✔ |
1d:2 [GLY] | 1a:547 [A] | d:2 [ALA] | a:544 [A] | ✔ |
1d:136 [PRO] | 1a:403 [C] | d:135 [ALA] | a:399 [C] | ✔ |
1d:9 [CYS] | 1a:429 [U] | d:9 [CYS] | a:425 [U] | ✔ |
1d:9 [CYS] | 1a:430 [A] | d:9 [CYS] | a:426 [A] | ✔ |
1d:32 [ALA] | 1a:429 [U] | d:33 [LYS] | a:425 [U] | ✔ |
1d:137 [SER] | 1a:402 [G] | d:136 [SER] | a:398 [G] | ✔ |
1d:137 [SER] | 1a:403 [C] | d:136 [SER] | a:399 [C] | ✔ |
1d:137 [SER] | 1a:620 [C] | d:136 [SER] | a:617 [U] | ✔ |
1d:62 [GLN] | 1a:544 [G] | d:61 [GLN] | a:541 [G] | ✔ |
1d:62 [GLN] | 1a:545 [C] | d:61 [GLN] | a:542 [C] | ✔ |
1d:7 [PRO] | 1a:428 [G] | d:7 [PRO] | a:424 [G] | ✔ |
1d:7 [PRO] | 1a:430 [A] | d:7 [PRO] | a:426 [A] | ✔ |
1d:30 [LYS] | 1a:410 [G] | d:31 [LYS] | a:406 [G] | ✔ |
1d:30 [LYS] | 1a:411 [A] | d:31 [LYS] | a:407 [A] | ✔ |
1d:4 [TYR] | 1a:546 [G] | d:4 [TYR] | a:543 [G] | ✔ |
1d:25 [ARG] | 1a:409 [G] | d:26 [LYS] | a:405 [U] | ✔ |
1d:25 [ARG] | 1a:410 [G] | d:26 [LYS] | a:406 [G] | ✔ |
1d:23 [GLY] | 1a:409 [G] | d:22 [LYS] | a:405 [U] | ✔ |
1d:155 [LEU] | 1a:437 [U] | d:154 [GLN] | a:433 [U] | ✔ |
1d:122 [ARG] | 1a:403 [C] | d:121 [SER] | a:399 [C] | ✔ |
1d:122 [ARG] | 1a:404 [U] | d:121 [SER] | a:400 [G] | ✔ |
1d:138 [TYR] | 1a:619 [U] | d:137 [ILE] | a:616 [U] | ✔ |
1d:138 [TYR] | 1a:620 [C] | d:137 [ILE] | a:617 [U] | ✔ |
1d:209 [ARG] | 1a:8 [A] | d:208 [LYS] | a:10 [A] | ✔ |
1d:118 [ARG] | 1a:404 [U] | d:117 [ARG] | a:400 [G] | ✔ |
1d:206 [PHE] | 1a:8 [A] | d:205 [LEU] | a:10 [A] | ✔ |
1d:73 [ARG] | 1a:400 [C] | d:72 [ARG] | a:396 [C] | ✔ |
1d:73 [ARG] | 1a:401 [C] | d:72 [ARG] | a:397 [C] | ✔ |
1d:73 [ARG] | 1a:546 [G] | d:72 [ARG] | a:543 [G] | ✔ |
1d:58 [LEU] | 1a:509 [A] | d:57 [LEU] | a:506 [A] | ✔ |
1d:58 [LEU] | 1a:544 [G] | d:57 [LEU] | a:541 [G] | ✔ |
1d:40 [PRO] | 1a:426 [G] | d:40 [GLY] | a:422 [U] | ✔ |
1d:40 [PRO] | 1a:427 [U] | d:40 [GLY] | a:423 [U] | ✔ |
1d:40 [PRO] | 1a:542 [G] | d:40 [GLY] | a:539 [G] | ✔ |
1d:123 [HIS] | 1a:437 [U] | d:122 [HIS] | a:433 [U] | ✔ |
1d:123 [HIS] | 1a:438 [G] | d:122 [HIS] | a:434 [U] | ✔ |
1d:123 [HIS] | 1a:439 [A] | d:122 [HIS] | a:435 [U] | ✔ |
1d:66 [ARG] | 1a:543 [C] | d:65 [ARG] | a:540 [U] | ❌ 7RYG_d_a |
1d:132 [ARG] | 1a:489 [C] | d:132 [VAL] | a:486 [U] | ❌ 7RYG_d_a |
1d:132 [ARG] | 1a:490 [G] | d:132 [VAL] | a:487 [C] | ❌ 7RYG_d_a |
1d:41 [GLY] | 1a:427 [U] | d:41 [GLN] | a:423 [U] | ❌ 7RYG_d_a |
1d:41 [GLY] | 1a:542 [G] | d:41 [GLN] | a:539 [G] | ❌ 7RYG_d_a |
1d:119 [GLN] | 1a:405 [U] | d:118 [GLN] | a:401 [U] | ❌ 7RYG_d_a |
1d:43 [HIS] | 1a:541 [G] | d:42 [HIS] | a:538 [G] | ❌ 7RYG_d_a |
1d:10 [ARG] | 1a:430 [A] | d:10 [LYS] | a:426 [A] | ❌ 7RYG_d_a |
1d:10 [ARG] | 1a:541 [G] | d:10 [LYS] | a:538 [G] | ❌ 7RYG_d_a |
1d:10 [ARG] | 1a:543 [C] | d:10 [LYS] | a:540 [U] | ❌ 7RYG_d_a |
1d:14 [ARG] | 1a:511 [C] | d:14 [ARG] | a:508 [C] | ❌ 7RYG_d_a |
1d:55 [ALA] | 1a:510 [A] | d:54 [SER] | a:507 [A] | ❌ 7RYG_d_a |
1d:115 [ARG] | 1a:406 [G] | d:114 [ALA] | a:402 [G] | ❌ 7RYG_d_a |
1d:22 [LYS] | 1a:409 [G] | d:21 [LEU] | a:405 [U] | ❌ 7RYG_d_a |
1d:22 [LYS] | 1a:410 [G] | d:21 [LEU] | a:406 [G] | ❌ 7RYG_d_a |
1d:22 [LYS] | 1a:429 [U] | d:21 [LEU] | a:425 [U] | ❌ 7RYG_d_a |
1d:22 [LYS] | 1a:430 [A] | d:21 [LEU] | a:426 [A] | ❌ 7RYG_d_a |
1d:13 [ARG] | 1a:426 [G] | d:13 [ARG] | a:422 [U] | ❌ 7RYG_d_a |
1d:59 [ARG] | 1a:509 [A] | d:58 [ARG] | a:506 [A] | ❌ 7RYG_d_a |
1d:59 [ARG] | 1a:543 [C] | d:58 [ARG] | a:540 [U] | ❌ 7RYG_d_a |
1d:136 [PRO] | 1a:404 [U] | d:135 [ALA] | a:400 [G] | ❌ 7RYG_d_a |
1d:62 [GLN] | 1a:543 [C] | d:61 [GLN] | a:540 [U] | ❌ 7RYG_d_a |
1d:30 [LYS] | 1a:409 [G] | d:31 [LYS] | a:405 [U] | ❌ 7RYG_d_a |
1d:25 [ARG] | 1a:411 [A] | d:26 [LYS] | a:407 [A] | ❌ 7RYG_d_a |
1d:25 [ARG] | 1a:429 [U] | d:26 [LYS] | a:425 [U] | ❌ 7RYG_d_a |
1d:155 [LEU] | 1a:436 [C] | d:154 [GLN] | a:432 [C] | ❌ 7RYG_d_a |
1d:122 [ARG] | 1a:619 [U] | d:121 [SER] | a:616 [U] | ❌ 7RYG_d_a |
1d:118 [ARG] | 1a:403 [C] | d:117 [ARG] | a:399 [C] | ❌ 7RYG_d_a |
1d:73 [ARG] | 1a:545 [C] | d:72 [ARG] | a:542 [C] | ❌ 7RYG_d_a |
1d:58 [LEU] | 1a:543 [C] | d:57 [LEU] | a:540 [U] | ❌ 7RYG_d_a |
1d:40 [PRO] | 1a:543 [C] | d:40 [GLY] | a:540 [U] | ❌ 7RYG_d_a |
1d:112 [VAL] | 1a:407 [G] | d:112 [THR] | a:403 [U] | ❌ 4Y4O_1d_1a |
1d:122 [ARG] | 1a:439 [A] | d:121 [SER] | a:435 [U] | ❌ 4Y4O_1d_1a |
1d:133 [VAL] | 1a:439 [A] | d:133 [ASN] | a:435 [U] | ❌ 4Y4O_1d_1a |
1d:133 [VAL] | 1a:403 [C] | d:133 [ASN] | a:399 [C] | ❌ 4Y4O_1d_1a |
1d:134 [ASP] | 1a:402 [G] | d:134 [ILE] | a:398 [G] | ❌ 4Y4O_1d_1a |
1d:134 [ASP] | 1a:403 [C] | d:134 [ILE] | a:399 [C] | ❌ 4Y4O_1d_1a |
1d:134 [ASP] | 1a:620 [C] | d:134 [ILE] | a:617 [U] | ❌ 4Y4O_1d_1a |
1d:14 [ARG] | 1a:510 [A] | d:14 [ARG] | a:507 [A] | ❌ 4Y4O_1d_1a |
1d:157 [LEU] | 1a:437 [U] | d:156 [ARG] | a:433 [U] | ❌ 4Y4O_1d_1a |
1d:157 [LEU] | 1a:406 [G] | d:156 [ARG] | a:402 [G] | ❌ 4Y4O_1d_1a |
1d:157 [LEU] | 1a:407 [G] | d:156 [ARG] | a:403 [U] | ❌ 4Y4O_1d_1a |
1d:2 [GLY] | 1a:403 [C] | d:2 [ALA] | a:399 [C] | ❌ 4Y4O_1d_1a |
1d:23 [GLY] | 1a:430 [A] | d:22 [LYS] | a:426 [A] | ❌ 4Y4O_1d_1a |
1d:23 [GLY] | 1a:429 [U] | d:22 [LYS] | a:425 [U] | ❌ 4Y4O_1d_1a |
1d:3 [ARG] | 1a:546 [G] | d:3 [ARG] | a:543 [G] | ❌ 4Y4O_1d_1a |
1d:30 [LYS] | 1a:413 [G] | d:31 [LYS] | a:409 [G] | ❌ 4Y4O_1d_1a |
1d:30 [LYS] | 1a:429 [U] | d:31 [LYS] | a:425 [U] | ❌ 4Y4O_1d_1a |
1d:32 [ALA] | 1a:413 [G] | d:33 [LYS] | a:409 [G] | ❌ 4Y4O_1d_1a |
1d:40 [PRO] | 1a:541 [G] | d:40 [GLY] | a:538 [G] | ❌ 4Y4O_1d_1a |
1d:41 [GLY] | 1a:419 [C] | d:41 [GLN] | a:415 [C] | ❌ 4Y4O_1d_1a |
1d:41 [GLY] | 1a:512 [U] | d:41 [GLN] | a:509 [U] | ❌ 4Y4O_1d_1a |
1d:41 [GLY] | 1a:511 [C] | d:41 [GLN] | a:508 [C] | ❌ 4Y4O_1d_1a |
1d:41 [GLY] | 1a:540 [G] | d:41 [GLN] | a:537 [G] | ❌ 4Y4O_1d_1a |
1d:65 [ARG] | 1a:544 [G] | d:64 [ARG] | a:541 [G] | ❌ 4Y4O_1d_1a |
1d:66 [ARG] | 1a:545 [C] | d:65 [ARG] | a:542 [C] | ❌ 4Y4O_1d_1a |
1d:71 [SER] | 1a:547 [A] | d:70 [LEU] | a:544 [A] | ❌ 4Y4O_1d_1a |
1d:73 [ARG] | 1a:547 [A] | d:72 [ARG] | a:544 [A] | ❌ 4Y4O_1d_1a |
1d:73 [ARG] | 1a:402 [G] | d:72 [ARG] | a:398 [G] | ❌ 4Y4O_1d_1a |
1d:8 [VAL] | 1a:408 [A] | d:8 [LYS] | a:404 [G] | ❌ 4Y4O_1d_1a |
1d:8 [VAL] | 1a:407 [G] | d:8 [LYS] | a:403 [U] | ❌ 4Y4O_1d_1a |
1d:84 [LYS] | 1a:614 [A] | d:83 [ARG] | a:611 [C] | ❌ 4Y4O_1d_1a |
1d:76 [ARG] | 1a:28 [G] | d:75 [SER] | a:30 [A] | ❌ 7RYG_d:75, 7RYG_a:30 no longer at interface |
1d:132 [ARG] | 1a:488 [C] | d:132 [VAL] | a:485 [C] | ❌ 7RYG_a:485 no longer at interface |
1d:141 [ARG] | 1a:615 [C] | d:140 [LYS] | a:612 [G] | ❌ 7RYG_d:140, 7RYG_a:612 no longer at interface |
1d:141 [ARG] | 1a:616 [G] | d:140 [LYS] | a:613 [A] | ❌ 7RYG_d:140, 7RYG_a:613 no longer at interface |
1d:119 [GLN] | 1a:495 [A] | d:118 [GLN] | a:493 [A] | ❌ 7RYG_a:493 no longer at interface |
1d:34 [GLU] | 1a:412 [A] | d:35 [ALA] | a:408 [A] | ❌ 7RYG_d:35, 7RYG_a:408 no longer at interface |
1d:54 [TYR] | 1a:508 [C] | d:53 [TYR] | a:505 [U] | ❌ 7RYG_a:505 no longer at interface |
1d:87 [GLY] | 1a:5 [U] | d:86 [GLY] | a:7 [U] | ❌ 7RYG_d:86, 7RYG_a:7 no longer at interface |
1d:30 [LYS] | 1a:412 [A] | d:31 [LYS] | a:408 [A] | ❌ 7RYG_a:408 no longer at interface |
1d:36 [ARG] | 1a:412 [A] | d:36 [ASN] | a:408 [A] | ❌ 7RYG_d:36, 7RYG_a:408 no longer at interface |
1d:209 [ARG] | 1a:26 [A] | d:208 [LYS] | a:28 [A] | ❌ 7RYG_a:28 no longer at interface |
1d:209 [ARG] | 1a:27 [G] | d:208 [LYS] | a:29 [G] | ❌ 7RYG_a:29 no longer at interface |
1d:209 [ARG] | 1a:507 [C] | d:208 [LYS] | a:504 [C] | ❌ 7RYG_a:504 no longer at interface |
1d:209 [ARG] | 1a:508 [C] | d:208 [LYS] | a:505 [U] | ❌ 7RYG_a:505 no longer at interface |
1d:73 [ARG] | 1a:549 [C] | d:72 [ARG] | a:546 [C] | ❌ 7RYG_a:546 no longer at interface |
1d:123 [HIS] | 1a:495 [A] | d:122 [HIS] | a:493 [A] | ❌ 7RYG_a:493 no longer at interface |
1d:119 [GLN] | 1a:494 [U] | d:118 [GLN] | a:492 [A] | ❌ 4Y4O_1a:494 no longer at interface |
1d:123 [HIS] | 1a:494 [U] | d:122 [HIS] | a:492 [A] | ❌ 4Y4O_1a:494 no longer at interface |
1d:124 [GLY] | 1a:441 [A] | d:123 [ARG] | a:436 [A] | ❌ 4Y4O_1d:124, 4Y4O_1a:441 no longer at interface |
1d:84 [LYS] | 1a:4 [U] | d:83 [ARG] | a:6 [C] | ❌ 4Y4O_1a:4 no longer at interface |
1d:84 [LYS] | 1a:612 [C] | d:83 [ARG] | a:609 [C] | ❌ 4Y4O_1a:612 no longer at interface |
1d:85 [LYS] | 1a:613 [C] | d:84 [VAL] | a:610 [C] | ❌ 7RYG_d:84 no longer at interface |
1d:85 [LYS] | 1a:614 [A] | d:84 [VAL] | a:611 [C] | ❌ 7RYG_d:84 no longer at interface |
1d:21 [LEU] | 1a:408 [A] | d:20 [GLN] | a:404 [G] | ❌ 7RYG_d:20 no longer at interface |
1d:6 [GLY] | 1a:430 [A] | d:6 [GLY] | a:426 [A] | ❌ 7RYG_d:6 no longer at interface |
1d:156 [GLU] | 1a:436 [C] | d:155 [LEU] | a:432 [C] | ❌ 7RYG_d:155 no longer at interface |
1d:156 [GLU] | 1a:437 [U] | d:155 [LEU] | a:433 [U] | ❌ 7RYG_d:155 no longer at interface |
1d:139 [ARG] | 1a:620 [C] | d:138 [GLN] | a:617 [U] | ❌ 7RYG_d:138 no longer at interface |
1d:26 [CYS] | 1a:409 [G] | d:27 [PRO] | a:405 [U] | ❌ 7RYG_d:27 no longer at interface |
1d:38 [TYR] | 1a:425 [G] | d:38 [ALA] | a:421 [G] | ❌ 7RYG_d:38 no longer at interface |
1d:38 [TYR] | 1a:426 [G] | d:38 [ALA] | a:422 [U] | ❌ 7RYG_d:38 no longer at interface |
1d:125 [HIS] | 1a:437 [U] | d:124 [SER] | a:433 [U] | ❌ 7RYG_d:124 no longer at interface |
1d:125 [HIS] | 1a:438 [G] | d:124 [SER] | a:434 [U] | ❌ 7RYG_d:124 no longer at interface |
1d:152 [SER] | 1a:438 [G] | d:151 [ALA] | a:434 [U] | ❌ 7RYG_d:151 no longer at interface |
1d:45 [GLN] | 1a:425 [G] | d:44 [GLN] | a:421 [G] | ❌ 7RYG_d:44 no longer at interface |
1d:45 [GLN] | 1a:426 [G] | d:44 [GLN] | a:422 [U] | ❌ 7RYG_d:44 no longer at interface |
1d:24 [GLU] | 1a:408 [A] | d:24 [GLY] | a:404 [G] | ❌ 7RYG_d:24 no longer at interface |
1d:24 [GLU] | 1a:409 [G] | d:24 [GLY] | a:405 [U] | ❌ 7RYG_d:24 no longer at interface |
1d:36 [ARG] | 1a:413 [G] | d:36 [ASN] | a:409 [G] | ❌ 7RYG_d:36 no longer at interface |
1d:36 [ARG] | 1a:426 [G] | d:36 [ASN] | a:422 [U] | ❌ 7RYG_d:36 no longer at interface |
1d:36 [ARG] | 1a:427 [U] | d:36 [ASN] | a:423 [U] | ❌ 7RYG_d:36 no longer at interface |
1d:36 [ARG] | 1a:428 [G] | d:36 [ASN] | a:424 [G] | ❌ 7RYG_d:36 no longer at interface |
1d:36 [ARG] | 1a:429 [U] | d:36 [ASN] | a:425 [U] | ❌ 7RYG_d:36 no longer at interface |
1d:46 [LYS] | 1a:511 [C] | d:45 [ALA] | a:508 [C] | ❌ 7RYG_d:45 no longer at interface |
1d:46 [LYS] | 1a:512 [U] | d:45 [ALA] | a:509 [U] | ❌ 7RYG_d:45 no longer at interface |
1d:49 [ARG] | 1a:510 [A] | d:48 [GLY] | a:507 [A] | ❌ 7RYG_d:48 no longer at interface |
1d:49 [ARG] | 1a:511 [C] | d:48 [GLY] | a:508 [C] | ❌ 7RYG_d:48 no longer at interface |
1d:111 [ALA] | 1a:408 [A] | d:111 [SER] | a:404 [G] | ❌ 4Y4O_1d:111 no longer at interface |
1d:124 [GLY] | 1a:439 [A] | d:123 [ARG] | a:435 [U] | ❌ 4Y4O_1d:124 no longer at interface |
1d:124 [GLY] | 1a:490 [G] | d:123 [ARG] | a:487 [C] | ❌ 4Y4O_1d:124 no longer at interface |
1d:124 [GLY] | 1a:489 [C] | d:123 [ARG] | a:486 [U] | ❌ 4Y4O_1d:124 no longer at interface |
1d:131 [ARG] | 1a:490 [G] | d:131 [ARG] | a:487 [C] | ❌ 4Y4O_1d:131 no longer at interface |
1d:131 [ARG] | 1a:619 [U] | d:131 [ARG] | a:616 [U] | ❌ 4Y4O_1d:131 no longer at interface |
1d:31 [CYS] | 1a:429 [U] | d:32 [THR] | a:425 [U] | ❌ 4Y4O_1d:31 no longer at interface |
1d:33 [MET] | 1a:426 [G] | d:34 [LYS] | a:422 [U] | ❌ 4Y4O_1d:33 no longer at interface |
1d:33 [MET] | 1a:425 [G] | d:34 [LYS] | a:421 [G] | ❌ 4Y4O_1d:33 no longer at interface |
1d:39 [PRO] | 1a:426 [G] | d:39 [PRO] | a:422 [U] | ❌ 4Y4O_1d:39 no longer at interface |
1d:39 [PRO] | 1a:427 [U] | d:39 [PRO] | a:423 [U] | ❌ 4Y4O_1d:39 no longer at interface |
1d:39 [PRO] | 1a:542 [G] | d:39 [PRO] | a:539 [G] | ❌ 4Y4O_1d:39 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Alpha-L RNA-binding motif | Bacterial small subunit ribosomal RNA | 0.91 | 4.08 | 0.44 | 0.93 | 0.91 | 0.87 | 0.92 | 0.61 | 0.46 | 0.32 | 0.49 |
Other pairs involving 4Y4O_1d_1a or 7RYG_d_a
Total number of entries: 5
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
4Y4O_1d_1a | 7K00_D_A | 0.73 | 0.98 | 1.52 | 0.45 | Alpha-L RNA-binding motif | Bacterial small subunit ribosomal RNA | compare |
4Y4O_1d_1a | 7RYG_d_a | 0.61 | 0.91 | 4.08 | 0.44 | Alpha-L RNA-binding motif | Bacterial small subunit ribosomal RNA | compare |
4Y4O_1d_1a | 6S0X_d_a | 0.36 | 0.95 | 4.96 | 0.39 | Alpha-L RNA-binding motif | Bacterial small subunit ribosomal RNA | compare |
6S0X_d_a | 7RYG_d_a | 0.58 | 0.96 | 2.24 | 0.49 | Alpha-L RNA-binding motif | Bacterial small subunit ribosomal RNA | compare |
7K00_D_A | 7RYG_d_a | 0.75 | 0.93 | 3.84 | 0.7 | Alpha-L RNA-binding motif | Bacterial small subunit ribosomal RNA | compare |