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All interfaces > All interologs > Interface groups > group64 > 4Y4O_1p_1a

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_1p
4Y4O_1a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1p:1 [MET] 1a:134 [A] 4.45 82.72
1p:1 [MET] 1a:135 [C] 2.7 1a:228 [A] base:BB 82.72
1p:1 [MET] 1a:136 [C] 3.65 1a:227 [G] 82.72
1p:2 [VAL] 1a:228 [A] 3.65 1a:135 [C] 77.67
1p:2 [VAL] 1a:229 [U] 3.34 1a:133 [U] 77.67
1p:3 [LYS] 1a:376 [G] 4.68 1a:387 [U] 60.12
1p:3 [LYS] 1a:377 [G] 2.53 1a:386 [C] 60.12
1p:3 [LYS] 1a:378 [G] 4.45 1a:385 [C] 60.12
1p:5 [ARG] 1a:376 [G] 2.78 1a:387 [U] 93.97
1p:5 [ARG] 1a:377 [G] 3.0 1a:386 [C] 93.97
1p:6 [LEU] 1a:375 [U] 2.92 1a:389 [A] sugar:BB 85.48
1p:6 [LEU] 1a:376 [G] 2.87 1a:387 [U] 85.48
1p:8 [ARG] 1a:374 [A] 4.55 88.36
1p:8 [ARG] 1a:375 [U] 4.65 1a:389 [A] 88.36
1p:8 [ARG] 1a:391 [G] 3.65 1a:370 [C] 88.36
1p:8 [ARG] 1a:392 [G] 3.2 1a:369 [C] 88.36
1p:9 [PHE] 1a:608 [A] 4.01 34.56
1p:9 [PHE] 1a:609 [A] 4.45 34.56
1p:9 [PHE] 1a:624 [C] 4.76 1a:616 [G] 34.56
1p:9 [PHE] 1a:625 [G] 3.58 1a:615 [C] 34.56
1p:10 [GLY] 1a:624 [C] 3.09 1a:616 [G] 98.67
1p:10 [GLY] 1a:625 [G] 3.35 1a:615 [C] 98.67
1p:11 [SER] 1a:43 [C] 4.37 1a:399 [G] 59.64
1p:11 [SER] 1a:44 [G] 3.95 1a:398 [C] 59.64
1p:11 [SER] 1a:392 [G] 4.29 1a:369 [C] 59.64
1p:11 [SER] 1a:623 [C] 3.76 1a:617 [G] 59.64
1p:11 [SER] 1a:624 [C] 3.55 1a:616 [G] 59.64
1p:12 [LYS] 1a:43 [C] 3.83 1a:399 [G] 73.13
1p:12 [LYS] 1a:44 [G] 3.16 1a:398 [C] 73.13
1p:12 [LYS] 1a:392 [G] 3.63 1a:369 [C] 73.13
1p:12 [LYS] 1a:393 [A] 2.61 1a:367 [U] 73.13
1p:13 [HIS] 1a:43 [C] 4.28 1a:399 [G] 66.02
1p:13 [HIS] 1a:392 [G] 2.72 1a:369 [C] 66.02
1p:13 [HIS] 1a:393 [A] 3.15 1a:367 [U] 66.02
1p:13 [HIS] 1a:450 [G] 3.91 1a:483 [C] 66.02
1p:13 [HIS] 1a:483 [C] 3.8 1a:450 [G] base:SC 66.02
1p:14 [ASN] 1a:392 [G] 4.65 1a:369 [C] 40.79
1p:14 [ASN] 1a:617 [G] 3.85 1a:623 [C] 40.79
1p:14 [ASN] 1a:624 [C] 3.13 1a:616 [G] sugar:SC 40.79
1p:15 [PRO] 1a:450 [G] 3.54 1a:483 [C] 71.21
1p:16 [HIS] 1a:624 [C] 3.91 1a:616 [G] 1.52
1p:16 [HIS] 1a:625 [G] 3.56 1a:615 [C] 1.52
1p:17 [TYR] 1a:374 [A] 3.56 sugar:SC 63.98
1p:17 [TYR] 1a:375 [U] 3.47 1a:389 [A] 63.98
1p:17 [TYR] 1a:451 [A] 4.96 63.98
1p:17 [TYR] 1a:626 [U] 4.8 1a:614 [A] 63.98
1p:18 [ARG] 1a:608 [A] 3.06 85.09
1p:18 [ARG] 1a:609 [A] 2.4 85.09
1p:18 [ARG] 1a:626 [U] 4.03 1a:614 [A] 85.09
1p:23 [ASP] 1a:134 [A] 4.94 71.41
1p:23 [ASP] 1a:229 [U] 2.58 1a:133 [U] sugar:SC 71.41
1p:23 [ASP] 1a:230 [G] 3.34 1a:132 [C] 71.41
1p:24 [ALA] 1a:110 [C] 4.67 1a:60 [A] 50.93
1p:24 [ALA] 1a:377 [G] 3.51 1a:386 [C] 50.93
1p:24 [ALA] 1a:378 [G] 4.37 1a:385 [C] 50.93
1p:25 [ARG] 1a:110 [C] 2.36 1a:60 [A] sugar:BB 71.65
1p:25 [ARG] 1a:111 [G] 3.75 1a:331 [G] 71.65
1p:25 [ARG] 1a:134 [A] 2.81 71.65
1p:25 [ARG] 1a:229 [U] 4.97 1a:133 [U] 71.65
1p:25 [ARG] 1a:230 [G] 2.93 1a:132 [C] sugar:SC 71.65
1p:26 [ARG] 1a:110 [C] 4.39 1a:60 [A] 20.74
1p:26 [ARG] 1a:111 [G] 4.3 1a:331 [G] 20.74
1p:26 [ARG] 1a:230 [G] 4.82 1a:132 [C] 20.74
1p:26 [ARG] 1a:231 [G] 3.82 1a:131 [C] 20.74
1p:26 [ARG] 1a:310 [G] 3.73 1a:290 [C] 20.74
1p:26 [ARG] 1a:311 [C] 3.03 1a:289 [G] 20.74
1p:27 [LYS] 1a:111 [G] 4.0 1a:331 [G] 54.18
1p:27 [LYS] 1a:112 [G] 3.62 1a:315 [A] 54.18
1p:27 [LYS] 1a:309 [G] 3.73 1a:291 [C] 54.18
1p:27 [LYS] 1a:310 [G] 3.23 1a:290 [C] 54.18
1p:28 [ARG] 1a:374 [A] 4.74 77.24
1p:28 [ARG] 1a:375 [U] 3.31 1a:389 [A] base:SC 77.24
1p:28 [ARG] 1a:376 [G] 3.9 1a:387 [U] 77.24
1p:28 [ARG] 1a:389 [A] 4.86 1a:375 [U] 77.24
1p:28 [ARG] 1a:390 [C] 2.92 1a:371 [G] sugar:SC 77.24
1p:28 [ARG] 1a:391 [G] 2.89 1a:370 [C] 77.24
1p:29 [ASP] 1a:309 [G] 3.99 1a:291 [C] 54.93
1p:30 [GLY] 1a:309 [G] 3.68 1a:291 [C] 72.27
1p:30 [GLY] 1a:310 [G] 3.15 1a:290 [C] 72.27
1p:31 [LYS] 1a:309 [G] 3.69 1a:291 [C] 44.34
1p:31 [LYS] 1a:310 [G] 3.2 1a:290 [C] 44.34
1p:31 [LYS] 1a:607 [A] 4.07 44.34
1p:32 [TYR] 1a:608 [A] 3.44 10.48
1p:33 [ILE] 1a:229 [U] 3.58 1a:133 [U] 65.63
1p:33 [ILE] 1a:230 [G] 3.98 1a:132 [C] 65.63
1p:35 [LYS] 1a:626 [U] 2.98 1a:614 [A] 20.38
1p:35 [LYS] 1a:627 [G] 4.07 1a:613 [C] 20.38
1p:38 [TYR] 1a:626 [U] 3.61 1a:614 [A] 10.99
1p:38 [TYR] 1a:627 [G] 4.23 1a:613 [C] 10.99
1p:39 [TYR] 1a:451 [A] 4.42 76.46
1p:39 [TYR] 1a:452 [A] 4.43 1a:480 [U] 76.46
1p:41 [PRO] 1a:449 [C] 4.7 1a:484 [G] 91.95
1p:41 [PRO] 1a:450 [G] 2.98 1a:483 [C] 91.95
1p:41 [PRO] 1a:451 [A] 4.36 91.95
1p:41 [PRO] 1a:452 [A] 4.13 1a:480 [U] 91.95
1p:42 [ARG] 1a:449 [C] 3.3 1a:484 [G] base:SC, sugar:BB 1.17
1p:42 [ARG] 1a:450 [G] 3.57 1a:483 [C] 1.17
1p:42 [ARG] 1a:617 [G] 4.97 1a:623 [C] 1.17
1p:43 [LYS] 1a:449 [C] 4.18 1a:484 [G] 33.14
1p:43 [LYS] 1a:450 [G] 2.75 1a:483 [C] 33.14
1p:43 [LYS] 1a:451 [A] 4.51 33.14
1p:43 [LYS] 1a:452 [A] 2.66 1a:480 [U] 33.14
1p:44 [THR] 1a:617 [G] 3.38 1a:623 [C] sugar:SC 28.84
1p:45 [THR] 1a:616 [G] 4.57 1a:624 [C] 40.07
1p:58 [TYR] 1a:228 [A] 3.69 1a:135 [C] 32.81
1p:59 [TRP] 1a:228 [A] 3.72 1a:135 [C] 73.55
1p:59 [TRP] 1a:229 [U] 3.5 1a:133 [U] 73.55
1p:61 [SER] 1a:137 [C] 3.01 1a:226 [G] sugar:BB 52.6
1p:62 [VAL] 1a:136 [C] 4.58 1a:227 [G] 49.43
1p:62 [VAL] 1a:137 [C] 4.09 1a:226 [G] 49.43
1p:62 [VAL] 1a:227 [G] 3.11 1a:136 [C] base:BB 49.43
1p:62 [VAL] 1a:228 [A] 3.58 1a:135 [C] 49.43
1p:63 [GLY] 1a:136 [C] 2.54 1a:227 [G] sugar:BB 98.24
1p:63 [GLY] 1a:137 [C] 3.21 1a:226 [G] 98.24
1p:63 [GLY] 1a:227 [G] 4.16 1a:136 [C] 98.24
1p:64 [ALA] 1a:136 [C] 4.57 1a:227 [G] 98.54
1p:65 [GLN] 1a:136 [C] 2.73 1a:227 [G] sugar:SC 71.49
1p:65 [GLN] 1a:137 [C] 3.98 1a:226 [G] 71.49
1p:67 [THR] 1a:376 [G] 3.08 1a:387 [U] 91.08
1p:67 [THR] 1a:377 [G] 3.42 1a:386 [C] 91.08
1p:68 [ASP] 1a:453 [A] 3.5 1a:479 [C] 34.5
1p:68 [ASP] 1a:454 [C] 3.6 1a:477 [A] 34.5
1p:69 [THR] 1a:375 [U] 2.79 1a:389 [A] 63.75
1p:69 [THR] 1a:376 [G] 3.85 1a:387 [U] 63.75
1p:69 [THR] 1a:452 [A] 4.01 1a:480 [U] 63.75
1p:69 [THR] 1a:453 [A] 4.07 1a:479 [C] 63.75
1p:70 [ALA] 1a:376 [G] 4.91 1a:387 [U] 84.33
1p:71 [ARG] 1a:454 [C] 4.89 1a:477 [A] 40.32
1p:72 [ARG] 1a:452 [A] 3.15 1a:480 [U] 49.36
1p:72 [ARG] 1a:453 [A] 3.34 1a:479 [C] 49.36
1p:75 [ARG] 1a:453 [A] 3.64 1a:479 [C] 28.17
1p:75 [ARG] 1a:454 [C] 2.48 1a:477 [A] 28.17
1p:75 [ARG] 1a:472 [A] 4.03 1a:460 [G] 28.17
1p:75 [ARG] 1a:473 [G] 4.11 1a:458 [C] 28.17
1p:76 [GLN] 1a:453 [A] 4.71 1a:479 [C] 33.97
1p:78 [GLY] 1a:473 [G] 4.92 1a:458 [C] 47.64
1p:80 [PHE] 1a:472 [A] 2.89 1a:460 [G] 0.0
1p:80 [PHE] 1a:473 [G] 3.71 1a:458 [C] 0.0
1p:81 [ARG] 1a:472 [A] 3.26 1a:460 [G] 22.67
1p:81 [ARG] 1a:473 [G] 3.16 1a:458 [C] 22.67
1p:82 [GLN] 1a:472 [A] 2.98 1a:460 [G] sugar:BB 51.85
1p:82 [GLN] 1a:473 [G] 4.99 1a:458 [C] 51.85

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group64 4Y4O_1p_1a 1p: 30s ribosomal protein s16, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1a: 16s ribosomal RNA, Thermus thermophilus hb8 (natural) Q5SJH3 Ribosomal protein S16 Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1p_1a 7K00_P_A 0.74 0.98 1.57 0.38 Ribosomal protein S16 Bacterial small subunit ribosomal RNA compare
4Y4O_1p_1a 6S0X_p_a 0.64 0.95 4.08 0.52 Ribosomal protein S16 Bacterial small subunit ribosomal RNA compare
4Y4O_1p_1a 7RYG_p_a 0.43 0.91 3.63 0.31 Ribosomal protein S16 Bacterial small subunit ribosomal RNA compare