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All interfaces > All interologs > Interface groups > group65 > 4YBB_DN_DB

Interface analysis

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Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

4YBB_DN
4YBB_DB
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
DN:16 [ARG] DB:89 [U] 4.77 67.38
DN:16 [ARG] DB:90 [C] 3.36 DB:86 [G] 67.38
DN:17 [ASN] DB:90 [C] 3.08 DB:86 [G] 3.38
DN:18 [ARG] DB:79 [G] 4.19 DB:97 [C] 49.59
DN:18 [ARG] DB:80 [U] 2.71 DB:96 [G] 49.59
DN:18 [ARG] DB:90 [C] 3.88 DB:86 [G] 49.59
DN:18 [ARG] DB:91 [C] 2.9 DB:85 [G] 49.59
DN:19 [GLY] DB:90 [C] 4.44 DB:86 [G] 46.09
DN:19 [GLY] DB:91 [C] 2.81 DB:85 [G] 46.09
DN:20 [LEU] DB:78 [A] 4.63 DB:98 [G] 16.5
DN:38 [ARG] DB:89 [U] 4.69 65.42
DN:38 [ARG] DB:90 [C] 3.61 DB:86 [G] 65.42
DN:38 [ARG] DB:91 [C] 3.68 DB:85 [G] 65.42

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group65 4YBB_DN_DB DN: 50s ribosomal protein l16, Escherichia coli (strain k12) (natural) DB: 5s rRNA, Escherichia coli k-12 (natural) P0ADY7 Ribosomal protein L10e 5S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4YBB_DN_DB 6XHV_1Q_1B 0.75 0.93 0.95 0.33 Ribosomal protein L10e 5S ribosomal RNA compare
4YBB_DN_DB 7RYG_L_B 0.79 0.92 0.85 0.67 Ribosomal protein L10e 5S ribosomal RNA compare
4YBB_DN_DB 7PJS_M_B 0.98 0.99 0.21 1.0 Ribosomal protein L10e 5S ribosomal RNA compare