Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6XHV_1Q
|
6XHV_1B
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| 1Q:15 [GLY] | 1B:91 [C] | 5.0 | 1B:86 [G] | 45.22 | ||
| 1Q:16 [ARG] | 1B:90 [A] | 4.56 | 1B:87 [G] | 63.49 | ||
| 1Q:16 [ARG] | 1B:91 [C] | 2.51 | 1B:86 [G] | 63.49 | ||
| 1Q:17 [LEU] | 1B:90 [A] | 3.84 | 1B:87 [G] | 0.0 | ||
| 1Q:17 [LEU] | 1B:91 [C] | 2.91 | 1B:86 [G] | 0.0 | ||
| 1Q:17 [LEU] | 1B:92 [C] | 4.66 | 1B:85 [G] | 0.0 | ||
| 1Q:18 [LYS] | 1B:80 [U] | 4.95 | 1B:97 [G] | 42.64 | ||
| 1Q:18 [LYS] | 1B:91 [C] | 4.0 | 1B:86 [G] | 42.64 | ||
| 1Q:18 [LYS] | 1B:92 [C] | 3.73 | 1B:85 [G] | 42.64 | ||
| 1Q:19 [GLY] | 1B:79 [C] | 4.3 | 1B:98 [G] | 30.95 | ||
| 1Q:19 [GLY] | 1B:91 [C] | 4.1 | 1B:86 [G] | 30.95 | ||
| 1Q:19 [GLY] | 1B:92 [C] | 2.61 | 1B:85 [G] | 30.95 | ||
| 1Q:20 [ALA] | 1B:92 [C] | 4.43 | 1B:85 [G] | 13.35 | ||
| 1Q:38 [GLU] | 1B:90 [A] | 4.03 | 1B:87 [G] | 51.6 | ||
| 1Q:39 [PRO] | 1B:90 [A] | 4.15 | 1B:87 [G] | 57.27 | ||
| 1Q:39 [PRO] | 1B:91 [C] | 4.68 | 1B:86 [G] | 57.27 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group65 | 6XHV_1Q_1B | 1Q: 50s ribosomal protein l16, Thermus thermophilus hb8 (natural) 1B: 5s ribosomal RNA, Thermus thermophilus hb8 (natural) | P60489 | Ribosomal protein L10e | 5S ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 3
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4YBB_DN_DB | 6XHV_1Q_1B | 0.75 | 0.93 | 0.95 | 0.33 | Ribosomal protein L10e | 5S ribosomal RNA | compare |
| 6XHV_1Q_1B | 7PJS_M_B | 0.71 | 0.95 | 0.89 | 0.33 | Ribosomal protein L10e | 5S ribosomal RNA | compare |
| 6XHV_1Q_1B | 7RYG_L_B | 0.78 | 0.92 | 1.04 | 0.2 | Ribosomal protein L10e | 5S ribosomal RNA | compare |