RNAprotDB

All interfaces > All interologs > Interface groups > group65 > 6XHV_1Q_1B vs 7PJS_M_B

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

6XHV_1Q
6XHV_1B
7PJS_M
7PJS_B
Conserved?
1Q:19 [GLY] 1B:79 [C] M:19 [GLY] B:79 [G] ✔
1Q:19 [GLY] 1B:91 [C] M:19 [GLY] B:90 [C] ✔
1Q:19 [GLY] 1B:92 [C] M:19 [GLY] B:91 [C] ✔
1Q:39 [PRO] 1B:91 [C] M:38 [ARG] B:90 [C] ✔
1Q:17 [LEU] 1B:91 [C] M:17 [ASN] B:90 [C] ✔
1Q:16 [ARG] 1B:90 [A] M:16 [ARG] B:89 [U] ✔
1Q:16 [ARG] 1B:91 [C] M:16 [ARG] B:90 [C] ✔
1Q:18 [LYS] 1B:80 [U] M:18 [ARG] B:80 [U] ✔
1Q:18 [LYS] 1B:91 [C] M:18 [ARG] B:90 [C] ✔
1Q:18 [LYS] 1B:92 [C] M:18 [ARG] B:91 [C] ✔
1Q:20 [ALA] 1B:92 [C] M:20 [LEU] B:91 [C] ❌ 7PJS_M_B
1Q:39 [PRO] 1B:90 [A] M:38 [ARG] B:89 [U] ❌ 7PJS_M_B
1Q:17 [LEU] 1B:90 [A] M:17 [ASN] B:89 [U] ❌ 7PJS_M_B
1Q:17 [LEU] 1B:92 [C] M:17 [ASN] B:91 [C] ❌ 7PJS_M_B
1Q:18 [LYS] 1B:79 [C] M:18 [ARG] B:79 [G] ❌ 6XHV_1Q_1B
1Q:39 [PRO] 1B:92 [C] M:38 [ARG] B:91 [C] ❌ 6XHV_1Q_1B
1Q:20 [ALA] 1B:78 [A] M:20 [LEU] B:78 [A] ❌ 6XHV_1B:78 no longer at interface
1Q:38 [GLU] 1B:90 [A] M:37 [GLY] B:89 [U] ❌ 7PJS_M:37 no longer at interface
1Q:15 [GLY] 1B:91 [C] M:15 [GLY] B:90 [C] ❌ 7PJS_M:15 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L10e 5S ribosomal RNA 0.95 0.89 0.33 0.97 0.9 1.0 1.0 0.71 0.55 0.40 0.33


Other pairs involving 6XHV_1Q_1B or 7PJS_M_B

Total number of entries: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4YBB_DN_DB 6XHV_1Q_1B 0.75 0.93 0.95 0.33 Ribosomal protein L10e 5S ribosomal RNA compare
4YBB_DN_DB 7PJS_M_B 0.98 0.99 0.21 1.0 Ribosomal protein L10e 5S ribosomal RNA compare
7PJS_M_B 7RYG_L_B 0.63 0.91 0.83 0.67 Ribosomal protein L10e 5S ribosomal RNA compare
6XHV_1Q_1B 7PJS_M_B 0.71 0.95 0.89 0.33 Ribosomal protein L10e 5S ribosomal RNA compare
6XHV_1Q_1B 7RYG_L_B 0.78 0.92 1.04 0.2 Ribosomal protein L10e 5S ribosomal RNA compare