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All interfaces > All interologs > Interface groups > group65 > 7PJS_M_B

Interface analysis

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Protein

Cartoon
Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7PJS_M
7PJS_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
M:16 [ARG] B:89 [U] 3.98 67.3
M:16 [ARG] B:90 [C] 3.59 B:86 [G] 67.3
M:17 [ASN] B:90 [C] 3.07 B:86 [G] 3.3
M:18 [ARG] B:79 [G] 4.21 B:97 [C] 49.5
M:18 [ARG] B:80 [U] 2.67 B:96 [G] 49.5
M:18 [ARG] B:90 [C] 3.59 B:86 [G] 49.5
M:18 [ARG] B:91 [C] 2.6 B:85 [G] 49.5
M:19 [GLY] B:79 [G] 4.43 B:97 [C] 46.0
M:19 [GLY] B:90 [C] 4.28 B:86 [G] 46.0
M:19 [GLY] B:91 [C] 3.05 B:85 [G] 46.0
M:20 [LEU] B:78 [A] 4.52 B:98 [G] 16.5
M:38 [ARG] B:90 [C] 3.34 B:86 [G] 65.4
M:38 [ARG] B:91 [C] 3.41 B:85 [G] 65.4

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group65 7PJS_M_B M: 50s ribosomal protein l16, Escherichia coli (natural) B: 5s ribosomal RNA, Escherichia coli (natural) P0ADY7 Ribosomal protein L10e 5S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
7PJS_M_B 7RYG_L_B 0.63 0.91 0.83 0.67 Ribosomal protein L10e 5S ribosomal RNA compare
4YBB_DN_DB 7PJS_M_B 0.98 0.99 0.21 1.0 Ribosomal protein L10e 5S ribosomal RNA compare
6XHV_1Q_1B 7PJS_M_B 0.71 0.95 0.89 0.33 Ribosomal protein L10e 5S ribosomal RNA compare