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All interfaces > All interologs > Interface groups > group66 > 4ZLD_A_B

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4ZLD_A
4ZLD_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:181 [TRP] B:1 [U] 3.42 base/AA stacks 71.12
A:185 [ARG] B:1 [U] 2.89 base:SC, sugar:SC 90.25
A:185 [ARG] B:2 [A] 3.76 B:16 [U] 90.25
A:185 [ARG] B:3 [A] 2.85 B:15 [U] 90.25
A:186 [ALA] B:12 [A] 4.64 B:6 [U] 54.34
A:187 [ARG] B:11 [G] 3.83 B:7 [C] 80.12
A:188 [GLY] B:11 [G] 3.97 B:7 [C] 61.11
A:190 [GLN] B:1 [U] 4.22 85.98
A:190 [GLN] B:3 [A] 3.55 B:15 [U] 85.98
A:191 [PHE] B:1 [U] 2.96 base:BB 80.91
A:192 [LEU] B:1 [U] 4.4 76.6
A:193 [GLY] B:1 [U] 3.94 84.65
A:216 [ARG] B:8 [U] 4.78 71.65
A:216 [ARG] B:9 [G] 2.91 base/AA stacks 71.65
A:217 [LYS] B:7 [C] 3.19 B:11 [G] 78.19
A:217 [LYS] B:8 [U] 3.7 78.19
A:233 [GLN] B:4 [C] 3.39 B:14 [G] 47.52
A:234 [ALA] B:4 [C] 4.86 B:14 [G] 63.8
A:235 [SER] B:3 [A] 4.82 B:15 [U] 85.91
A:235 [SER] B:4 [C] 2.57 B:14 [G] 85.91
A:235 [SER] B:5 [U] 3.79 B:13 [A] 85.91
A:236 [LYS] B:5 [U] 3.63 B:13 [A] 76.56
A:236 [LYS] B:6 [U] 2.74 B:12 [A] 76.56
A:237 [THR] B:4 [C] 3.44 B:14 [G] 84.71
A:237 [THR] B:5 [U] 2.65 B:13 [A] 84.71
A:238 [SER] B:4 [C] 3.92 B:14 [G] 73.81
A:240 [GLY] B:9 [G] 4.92 63.35
A:244 [GLN] B:9 [G] 2.87 base:SC, sugar:SC 84.14
A:244 [GLN] B:10 [U] 3.38 84.14
A:244 [GLN] B:11 [G] 3.41 B:7 [C] base/AA stacks 84.14
A:247 [TYR] B:8 [U] 4.93 71.84
A:247 [TYR] B:9 [G] 2.68 71.84
A:247 [TYR] B:10 [U] 3.7 71.84
A:248 [ARG] B:10 [U] 3.31 67.96
A:248 [ARG] B:11 [G] 2.81 B:7 [C] 67.96
A:250 [SER] B:10 [U] 3.36 86.4
A:254 [VAL] B:9 [G] 4.18 75.42
A:257 [ARG] B:8 [U] 4.59 74.01
A:259 [GLU] B:8 [U] 3.1 14.46
A:260 [ASP] B:8 [U] 3.13 44.31
A:261 [SER] B:7 [C] 4.99 B:11 [G] 79.1
A:261 [SER] B:8 [U] 2.57 79.1
A:262 [SER] B:8 [U] 3.06 sugar:BB 92.4
A:262 [SER] B:9 [G] 4.43 92.4

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group66 4ZLD_A_B A: Roquin-2, Homo sapiens (genetically engineered) B: Homo sapiens (synthetic) Q9HBD1 winged ✘

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4ZLD_A_B 6TQA_A_E 0.81 0.98 0.67 0.45 winged compare
4ZLD_A_B 6TQB_A_B 0.76 0.98 0.47 0.64 winged compare
4ZLD_A_B 5F5H_A_C 0.71 0.94 0.59 0.33 winged compare