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All interfaces > All interologs > Interface groups > group66 > 5F5H_A_C

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

5F5H_A
5F5H_C
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:188 [ARG] C:2 [C] 4.6 C:22 [G] 89.44
A:188 [ARG] C:3 [C] 2.45 C:21 [G] 89.44
A:188 [ARG] C:4 [A] 4.62 C:20 [U] 89.44
A:189 [ALA] C:15 [G] 3.96 C:8 [C] 53.43
A:190 [ARG] C:15 [G] 3.37 C:8 [C] 77.18
A:191 [GLY] C:15 [G] 4.02 C:8 [C] 55.44
A:193 [GLN] C:4 [A] 3.85 C:20 [U] 87.19
A:219 [ARG] C:8 [C] 3.54 C:15 [G] 72.83
A:219 [ARG] C:9 [G] 2.82 C:14 [A] base:SC, base:SC 72.83
A:219 [ARG] C:10 [U] 3.69 72.83
A:220 [LYS] C:7 [C] 4.88 C:16 [G] 79.35
A:236 [GLN] C:5 [C] 4.29 C:18 [G] 47.92
A:238 [SER] C:5 [C] 2.69 C:18 [G] 86.58
A:238 [SER] C:6 [A] 3.51 C:17 [U] 86.58
A:239 [LYS] C:6 [A] 3.42 C:17 [U] 74.47
A:239 [LYS] C:7 [C] 3.62 C:16 [G] 74.47
A:240 [THR] C:5 [C] 3.61 C:18 [G] 79.14
A:240 [THR] C:6 [A] 2.65 C:17 [U] 79.14
A:241 [SER] C:5 [C] 4.4 C:18 [G] 69.05
A:247 [GLN] C:9 [G] 4.1 C:14 [A] 79.57
A:247 [GLN] C:10 [U] 2.9 base:SC, base:SC 79.57
A:247 [GLN] C:13 [U] 4.97 79.57
A:247 [GLN] C:14 [A] 4.56 C:9 [G] 79.57
A:249 [LEU] C:11 [U] 3.81 82.01
A:250 [TYR] C:10 [U] 3.32 base/AA stacks 70.11
A:250 [TYR] C:11 [U] 3.24 70.11
A:250 [TYR] C:13 [U] 2.94 base:BB 70.11
A:251 [ARG] C:13 [U] 3.62 59.38
A:251 [ARG] C:14 [A] 4.76 C:9 [G] 59.38
A:251 [ARG] C:15 [G] 3.39 C:8 [C] 59.38
A:253 [SER] C:11 [U] 3.38 85.18
A:253 [SER] C:13 [U] 2.76 base:SC 85.18
A:254 [CYS] C:11 [U] 3.31 71.47
A:255 [PHE] C:11 [U] 2.72 base:BB, base:BB 82.07
A:256 [LYS] C:11 [U] 4.81 33.11
A:257 [VAL] C:11 [U] 3.47 69.2
A:259 [LYS] C:10 [U] 2.68 74.43
A:259 [LYS] C:11 [U] 2.6 74.43
A:259 [LYS] C:12 [C] 4.23 74.43
A:262 [GLU] C:9 [G] 4.66 C:14 [A] 9.89
A:263 [ASP] C:9 [G] 4.56 C:14 [A] 40.78
A:264 [SER] C:9 [G] 4.45 C:14 [A] 79.04
A:265 [SER] C:10 [U] 4.34 92.71
A:270 [LYS] C:11 [U] 3.61 78.63

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group66 5F5H_A_C A: Roquin-1, Mus musculus (genetically engineered) C: Mus musculus (genetically engineered) Q4VGL6 winged ✘

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
5F5H_A_C 6TQB_A_B 0.76 0.94 0.38 0.18 winged compare
5F5H_A_C 6TQA_A_E 0.76 0.94 0.54 0.18 winged compare
4ZLD_A_B 5F5H_A_C 0.71 0.94 0.59 0.33 winged compare