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All interfaces > All interologs > Interface groups > group66 > 6TQA_A_E

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

6TQA_A
6TQA_E
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:181 [SER] E:4 [G] 4.79 E:18 [C] 27.35
A:184 [TRP] E:4 [G] 3.99 E:18 [C] 68.43
A:185 [ALA] E:3 [U] 3.93 E:19 [A] 60.61
A:185 [ALA] E:4 [G] 3.62 E:18 [C] 60.61
A:188 [ARG] E:3 [U] 4.9 E:19 [A] 90.99
A:188 [ARG] E:4 [G] 2.76 E:18 [C] 90.99
A:188 [ARG] E:5 [C] 3.35 E:17 [G] 90.99
A:190 [ARG] E:13 [U] 3.53 E:9 [A] 78.41
A:191 [GLY] E:13 [U] 4.3 E:9 [A] 63.27
A:193 [GLN] E:5 [C] 3.2 E:17 [G] 84.84
A:219 [ARG] E:10 [U] 4.49 73.64
A:219 [ARG] E:11 [A] 2.92 base/AA stacks 73.64
A:220 [LYS] E:9 [A] 3.01 E:13 [U] 80.71
A:220 [LYS] E:10 [U] 4.01 80.71
A:236 [GLN] E:6 [C] 4.04 E:16 [G] 45.46
A:238 [SER] E:5 [C] 4.76 E:17 [G] 85.01
A:238 [SER] E:6 [C] 2.39 E:16 [G] 85.01
A:238 [SER] E:7 [U] 3.82 E:15 [A] 85.01
A:239 [LYS] E:7 [U] 3.78 E:15 [A] 78.1
A:239 [LYS] E:8 [A] 2.76 E:14 [U] 78.1
A:240 [THR] E:6 [C] 3.25 E:16 [G] 82.67
A:240 [THR] E:7 [U] 2.55 E:15 [A] 82.67
A:241 [SER] E:6 [C] 3.85 E:16 [G] 74.81
A:244 [HIS] E:6 [C] 4.74 E:16 [G] 77.58
A:247 [GLN] E:11 [A] 3.24 sugar:SC base/AA stacks 82.8
A:247 [GLN] E:12 [U] 3.69 82.8
A:247 [GLN] E:13 [U] 3.65 E:9 [A] base/AA stacks 82.8
A:250 [TYR] E:11 [A] 2.84 72.03
A:250 [TYR] E:12 [U] 3.23 72.03
A:251 [ARG] E:12 [U] 3.24 65.55
A:251 [ARG] E:13 [U] 2.91 E:9 [A] 65.55
A:253 [SER] E:12 [U] 2.74 base:SC 83.19
A:255 [PHE] E:12 [U] 4.91 84.55
A:257 [VAL] E:11 [A] 4.12 73.97
A:259 [LYS] E:10 [U] 2.27 base:SC 75.34
A:260 [ARG] E:10 [U] 4.48 76.11
A:262 [GLU] E:10 [U] 3.33 20.72
A:263 [ASP] E:10 [U] 2.95 46.41
A:264 [SER] E:10 [U] 2.63 84.51
A:265 [SER] E:10 [U] 2.88 sugar:BB 90.73
A:265 [SER] E:11 [A] 4.41 90.73

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group66 6TQA_A_E A: Roquin-1, Mus musculus (genetically engineered) E: Mus musculus (synthetic) Q4VGL6 winged ✘

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
5F5H_A_C 6TQA_A_E 0.76 0.94 0.54 0.18 winged compare
6TQA_A_E 6TQB_A_B 0.95 0.99 0.56 0.45 winged compare
4ZLD_A_B 6TQA_A_E 0.81 0.98 0.67 0.45 winged compare