Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6TQB_A
|
6TQB_B
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| A:181 [SER] | B:5 [A] | 4.67 | B:19 [U] | 33.86 | ||
| A:184 [TRP] | B:5 [A] | 3.84 | B:19 [U] | 65.18 | ||
| A:185 [ALA] | B:4 [G] | 3.96 | B:20 [C] | 57.42 | ||
| A:185 [ALA] | B:5 [A] | 3.63 | B:19 [U] | 57.42 | ||
| A:188 [ARG] | B:5 [A] | 2.95 | B:19 [U] | 90.14 | ||
| A:188 [ARG] | B:6 [A] | 3.41 | B:18 [U] | 90.14 | ||
| A:189 [ALA] | B:15 [A] | 4.94 | B:9 [U] | 54.49 | ||
| A:190 [ARG] | B:14 [U] | 3.63 | B:10 [A] | 75.24 | ||
| A:191 [GLY] | B:14 [U] | 4.22 | B:10 [A] | 57.99 | ||
| A:193 [GLN] | B:6 [A] | 2.94 | B:18 [U] | 83.06 | ||
| A:219 [ARG] | B:11 [U] | 4.64 | 70.54 | |||
| A:219 [ARG] | B:12 [A] | 2.84 | base/AA stacks | 70.54 | ||
| A:236 [GLN] | B:7 [A] | 4.26 | B:17 [U] | 41.63 | ||
| A:238 [SER] | B:7 [A] | 2.7 | B:17 [U] | 81.83 | ||
| A:238 [SER] | B:8 [U] | 3.75 | B:16 [A] | 81.83 | ||
| A:239 [LYS] | B:8 [U] | 3.67 | B:16 [A] | 75.13 | ||
| A:239 [LYS] | B:9 [U] | 2.73 | B:15 [A] | 75.13 | ||
| A:240 [THR] | B:7 [A] | 3.29 | B:17 [U] | 82.54 | ||
| A:240 [THR] | B:8 [U] | 2.56 | B:16 [A] | 82.54 | ||
| A:241 [SER] | B:7 [A] | 3.77 | B:17 [U] | 72.34 | ||
| A:244 [HIS] | B:7 [A] | 4.44 | B:17 [U] | 77.39 | ||
| A:244 [HIS] | B:8 [U] | 4.9 | B:16 [A] | 77.39 | ||
| A:247 [GLN] | B:12 [A] | 3.11 | sugar:SC | 79.52 | ||
| A:247 [GLN] | B:13 [U] | 3.58 | 79.52 | |||
| A:247 [GLN] | B:14 [U] | 3.73 | B:10 [A] | base/AA stacks | 79.52 | |
| A:250 [TYR] | B:11 [U] | 4.89 | 67.97 | |||
| A:250 [TYR] | B:12 [A] | 2.61 | 67.97 | |||
| A:250 [TYR] | B:13 [U] | 3.28 | 67.97 | |||
| A:251 [ARG] | B:13 [U] | 3.04 | 62.84 | |||
| A:251 [ARG] | B:14 [U] | 2.89 | B:10 [A] | 62.84 | ||
| A:253 [SER] | B:13 [U] | 2.86 | base:SC | 82.85 | ||
| A:255 [PHE] | B:13 [U] | 4.86 | 83.22 | |||
| A:257 [VAL] | B:12 [A] | 4.11 | 68.66 | |||
| A:260 [ARG] | B:11 [U] | 4.53 | 77.44 | |||
| A:262 [GLU] | B:11 [U] | 3.24 | 5.48 | |||
| A:263 [ASP] | B:11 [U] | 3.28 | 44.9 | |||
| A:264 [SER] | B:11 [U] | 2.67 | 77.95 | |||
| A:265 [SER] | B:11 [U] | 2.94 | sugar:BB | 90.45 | ||
| A:265 [SER] | B:12 [A] | 4.41 | 90.45 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group66 | 6TQB_A_B | A: Roquin-1, Mus musculus (genetically engineered) B: Mus musculus (synthetic) | Q4VGL6 | winged | ✘ |
|
Interologs
Total number of interologs for this interface: 3
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 5F5H_A_C | 6TQB_A_B | 0.76 | 0.94 | 0.38 | 0.18 | winged | compare | |
| 6TQA_A_E | 6TQB_A_B | 0.95 | 0.99 | 0.56 | 0.45 | winged | compare | |
| 4ZLD_A_B | 6TQB_A_B | 0.76 | 0.98 | 0.47 | 0.64 | winged | compare |