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All interfaces > All interologs > Interface groups > group67 > 5W3V_A_E,F

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Licorice
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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

5W3V_A
5W3V_E,F
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:16 [LYS] F:15 [C] 3.99 E:7 [G] 30.14
A:17 [ARG] E:2 [A] 3.82 52.91
A:17 [ARG] E:3 [C] 3.17 F:19 [G] base:SC 52.91
A:17 [ARG] E:4 [C] 4.17 F:18 [G] 52.91
A:17 [ARG] F:18 [G] 2.95 E:4 [C] base:SC 52.91
A:17 [ARG] F:19 [G] 2.7 E:3 [C] base:SC 52.91
A:18 [ARG] E:1 [A] 3.1 66.66
A:18 [ARG] E:3 [C] 4.9 F:19 [G] 66.66
A:18 [ARG] F:11 [A] 3.46 66.66
A:18 [ARG] F:14 [C] 4.62 E:8 [G] 66.66
A:18 [ARG] F:15 [C] 4.95 E:7 [G] 66.66
A:19 [VAL] E:1 [A] 3.75 44.4
A:19 [VAL] E:2 [A] 3.3 44.4
A:19 [VAL] F:14 [C] 4.48 E:8 [G] 44.4
A:20 [ASN] F:14 [C] 3.12 E:8 [G] 21.87
A:20 [ASN] F:15 [C] 3.14 E:7 [G] 21.87
A:21 [LYS] F:12 [A] 4.65 3.35
A:21 [LYS] F:13 [C] 4.22 E:9 [G] 3.35
A:21 [LYS] F:14 [C] 2.9 E:8 [G] 3.35
A:23 [TYR] E:1 [A] 3.35 base/AA stacks 51.14
A:23 [TYR] F:12 [A] 4.68 51.14
A:23 [TYR] F:13 [C] 2.24 E:9 [G] 51.14
A:23 [TYR] F:14 [C] 3.95 E:8 [G] 51.14
A:24 [TYR] E:1 [A] 3.28 12.98
A:24 [TYR] E:2 [A] 3.92 12.98
A:25 [PRO] E:1 [A] 3.8 69.37
A:25 [PRO] E:2 [A] 3.68 69.37
A:26 [ARG] E:2 [A] 2.87 59.3
A:51 [LYS] E:1 [A] 4.97 44.33
A:51 [LYS] E:2 [A] 3.09 44.33
A:82 [TRP] E:2 [A] 3.43 base/AA stacks 92.5
A:111 [LEU] E:2 [A] 2.95 base:BB 91.07
A:112 [TYR] E:2 [A] 3.58 92.0
A:113 [TYR] E:2 [A] 2.93 base:BB 53.48
A:113 [TYR] E:3 [C] 4.59 F:19 [G] 53.48
A:114 [HIS] E:2 [A] 3.55 52.64
A:114 [HIS] F:19 [G] 3.3 E:3 [C] 52.64
A:114 [HIS] F:20 [C] 4.81 52.64
A:115 [TRP] E:2 [A] 3.42 20.18
A:115 [TRP] E:3 [C] 3.15 F:19 [G] base/AA stacks 20.18
A:115 [TRP] F:19 [G] 3.46 E:3 [C] base/AA stacks 20.18
A:115 [TRP] F:20 [C] 4.22 20.18
A:120 [GLN] F:20 [C] 3.13 67.63
A:168 [LYS] F:16 [C] 4.99 E:6 [G] 54.71
A:169 [ASN] F:16 [C] 4.37 E:6 [G] 54.46
A:172 [ALA] F:17 [G] 4.05 E:5 [C] 30.14
A:172 [ALA] F:18 [G] 4.32 E:4 [C] 30.14
A:175 [ARG] F:17 [G] 3.58 E:5 [C] 48.15
A:175 [ARG] F:18 [G] 2.87 E:4 [C] 48.15
A:176 [ARG] F:19 [G] 3.21 E:3 [C] 59.04
A:176 [ARG] F:20 [C] 3.07 59.04
A:179 [ARG] F:18 [G] 3.88 E:4 [C] 59.64
A:179 [ARG] F:19 [G] 3.08 E:3 [C] 59.64
A:183 [ARG] F:20 [C] 3.13 65.86

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group67 5W3V_A_E,F A: Apobec3h, Macaca nemestrina (genetically engineered) E: Synthetic construct (synthetic) F: Synthetic construct (synthetic) A0A1B2AH37 Cytidine deaminase-like ✘

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
5W3V_A_E,F 5Z98_B_C,D 0.66 0.9 1.03 0.36 Cytidine deaminase-like compare
5W3V_A_E,F 5Z98_A_C,D 0.84 0.94 0.89 0.45 Cytidine deaminase-like compare