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All interfaces > All interologs > Interface groups > group67 > 5W3V_B_E,F

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Licorice
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Licorice
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Chain
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

5W3V_B
5W3V_E,F
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
B:16 [LYS] E:5 [C] 4.28 F:17 [G] 29.39
B:17 [ARG] E:7 [G] 4.08 F:15 [C] base/AA stacks 23.42
B:17 [ARG] E:8 [G] 2.64 F:14 [C] base:SC, base:SC 23.42
B:17 [ARG] E:9 [G] 4.04 F:13 [C] 23.42
B:17 [ARG] F:12 [A] 3.89 23.42
B:17 [ARG] F:13 [C] 4.3 E:9 [G] 23.42
B:17 [ARG] F:14 [C] 4.4 E:8 [G] 23.42
B:18 [ARG] E:4 [C] 4.12 F:18 [G] 75.08
B:18 [ARG] F:11 [A] 3.2 75.08
B:19 [VAL] E:4 [C] 4.75 F:18 [G] 53.12
B:19 [VAL] F:11 [A] 3.83 53.12
B:19 [VAL] F:12 [A] 3.37 53.12
B:20 [ASN] E:4 [C] 3.28 F:18 [G] 10.61
B:20 [ASN] E:5 [C] 3.49 F:17 [G] 10.61
B:21 [LYS] E:2 [A] 4.53 0.42
B:21 [LYS] E:3 [C] 4.08 F:19 [G] 0.42
B:21 [LYS] E:4 [C] 2.5 F:18 [G] 0.42
B:23 [TYR] E:2 [A] 4.73 40.32
B:23 [TYR] E:3 [C] 2.36 F:19 [G] 40.32
B:23 [TYR] E:4 [C] 4.13 F:18 [G] 40.32
B:23 [TYR] F:11 [A] 3.41 base/AA stacks 40.32
B:24 [TYR] F:11 [A] 3.22 35.63
B:24 [TYR] F:12 [A] 3.89 35.63
B:25 [PRO] F:11 [A] 3.57 67.05
B:25 [PRO] F:12 [A] 3.66 67.05
B:26 [ARG] F:11 [A] 4.91 67.9
B:26 [ARG] F:12 [A] 2.77 67.9
B:82 [TRP] F:12 [A] 3.49 base/AA stacks 92.82
B:111 [LEU] F:12 [A] 2.94 base:BB 91.28
B:112 [TYR] F:12 [A] 3.63 92.21
B:113 [TYR] F:12 [A] 2.57 base:BB, sugar:SC 61.19
B:113 [TYR] F:13 [C] 4.5 E:9 [G] 61.19
B:114 [HIS] E:9 [G] 3.14 F:13 [C] 53.06
B:114 [HIS] E:10 [A] 4.74 53.06
B:114 [HIS] F:12 [A] 3.54 53.06
B:114 [HIS] F:13 [C] 5.0 E:9 [G] 53.06
B:115 [TRP] E:9 [G] 3.52 F:13 [C] base/AA stacks 18.68
B:115 [TRP] E:10 [A] 4.15 18.68
B:115 [TRP] F:12 [A] 3.49 18.68
B:115 [TRP] F:13 [C] 3.13 E:9 [G] base/AA stacks 18.68
B:120 [GLN] E:10 [A] 3.09 69.88
B:172 [ALA] E:7 [G] 4.49 F:15 [C] 5.52
B:172 [ALA] E:8 [G] 4.73 F:14 [C] 5.52
B:175 [ARG] E:7 [G] 3.55 F:15 [C] 47.55
B:175 [ARG] E:8 [G] 2.82 F:14 [C] 47.55
B:176 [ARG] E:9 [G] 3.21 F:13 [C] 51.61
B:176 [ARG] E:10 [A] 3.02 51.61
B:179 [ARG] E:9 [G] 3.71 F:13 [C] 60.55

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group67 5W3V_B_E,F B: Apobec3h, Macaca nemestrina (genetically engineered) E: Synthetic construct (synthetic) F: Synthetic construct (synthetic) A0A1B2AH37 Cytidine deaminase-like ✘

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
5W3V_B_E,F 5Z98_A_C,D 0.62 0.91 0.91 0.36 Cytidine deaminase-like compare
5W3V_B_E,F 5Z98_B_C,D 0.64 0.95 0.86 0.55 Cytidine deaminase-like compare