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All interfaces > All interologs > Interface groups > group67 > 5Z98_A_C,D

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

5Z98_A
5Z98_C,D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:16 [ARG] D:14 [C] 4.76 C:8 [G] 32.11
A:16 [ARG] D:15 [C] 3.09 C:7 [G] 32.11
A:17 [ARG] C:2 [U] 4.67 55.34
A:17 [ARG] D:19 [C] 4.87 C:3 [G] 55.34
A:18 [ARG] D:15 [C] 3.7 C:7 [G] 69.67
A:18 [ARG] D:16 [C] 2.87 C:6 [G] base:SC 69.67
A:19 [LEU] C:1 [C] 3.82 10.04
A:19 [LEU] C:2 [U] 4.46 10.04
A:19 [LEU] D:14 [C] 4.97 C:8 [G] 10.04
A:20 [ARG] D:14 [C] 3.68 C:8 [G] 34.73
A:20 [ARG] D:15 [C] 2.77 C:7 [G] 34.73
A:21 [ARG] D:13 [A] 4.77 C:9 [U] 0.0
A:23 [TYR] C:1 [C] 3.24 base/AA stacks 39.55
A:24 [TYR] C:1 [C] 3.3 29.49
A:24 [TYR] C:2 [U] 3.69 29.49
A:25 [PRO] C:1 [C] 4.04 78.26
A:25 [PRO] C:2 [U] 3.65 78.26
A:26 [ARG] C:1 [C] 4.84 65.7
A:26 [ARG] C:2 [U] 2.83 65.7
A:82 [TRP] C:2 [U] 3.36 base/AA stacks 92.86
A:110 [ARG] C:2 [U] 4.93 97.21
A:111 [LEU] C:2 [U] 3.13 base:BB 91.18
A:112 [TYR] C:2 [U] 3.88 95.5
A:113 [TYR] C:2 [U] 3.06 base:BB 59.35
A:114 [HIS] C:2 [U] 3.61 57.62
A:114 [HIS] C:3 [G] 4.13 D:19 [C] 57.62
A:114 [HIS] D:19 [C] 3.19 C:3 [G] 57.62
A:114 [HIS] D:20 [A] 4.66 57.62
A:115 [TRP] C:2 [U] 3.47 30.0
A:115 [TRP] C:3 [G] 3.25 D:19 [C] base/AA stacks 30.0
A:115 [TRP] D:19 [C] 3.73 C:3 [G] 30.0
A:115 [TRP] D:20 [A] 4.11 30.0
A:117 [LYS] D:20 [A] 3.24 36.41
A:120 [GLN] D:20 [A] 3.04 67.26
A:168 [LYS] D:16 [C] 3.89 C:6 [G] 54.83
A:172 [ALA] D:17 [G] 4.02 C:5 [C] 14.97
A:172 [ALA] D:18 [G] 4.41 C:4 [C] 14.97
A:175 [ARG] D:17 [G] 2.7 C:5 [C] 48.82
A:175 [ARG] D:18 [G] 2.82 C:4 [C] 48.82
A:176 [ARG] D:19 [C] 3.14 C:3 [G] base/AA stacks 63.73
A:176 [ARG] D:20 [A] 2.9 63.73
A:179 [ARG] D:18 [G] 4.23 C:4 [C] 59.65
A:179 [ARG] D:19 [C] 2.65 C:3 [G] 59.65

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group67 5Z98_A_C,D A: Apolipoprotein b mRNA editing enzyme catalytic polypeptide-like protein 3h, Pan troglodytes (genetically engineered) C: Unidentified (genetically engineered) D: Unidentified (genetically engineered) B7T0U6 Cytidine deaminase-like ✘

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
5W3V_A_E,F 5Z98_A_C,D 0.84 0.94 0.89 0.45 Cytidine deaminase-like compare
5W3V_B_E,F 5Z98_A_C,D 0.62 0.91 0.91 0.36 Cytidine deaminase-like compare