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All interfaces > All interologs > Interface groups > group67 > 5Z98_B_C,D

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

5Z98_B
5Z98_C,D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
B:16 [ARG] C:4 [C] 4.93 D:18 [G] 32.11
B:16 [ARG] C:5 [C] 3.21 D:17 [G] 32.11
B:17 [ARG] C:6 [G] 2.98 D:16 [C] base/AA stacks 55.34
B:17 [ARG] C:7 [G] 3.05 D:15 [C] base:SC 55.34
B:18 [ARG] C:4 [C] 4.58 D:18 [G] 69.67
B:18 [ARG] C:5 [C] 3.08 D:17 [G] 69.67
B:18 [ARG] C:6 [G] 2.89 D:16 [C] base:SC 69.67
B:19 [LEU] D:11 [A] 4.42 10.04
B:19 [LEU] D:12 [U] 3.92 10.04
B:20 [ARG] C:4 [C] 4.95 D:18 [G] 34.73
B:20 [ARG] C:5 [C] 4.33 D:17 [G] 34.73
B:21 [ARG] C:3 [G] 2.56 D:19 [C] 0.0
B:21 [ARG] C:4 [C] 3.15 D:18 [G] 0.0
B:24 [TYR] D:12 [U] 4.14 29.49
B:25 [PRO] D:12 [U] 3.73 78.26
B:26 [ARG] D:11 [A] 2.8 65.7
B:26 [ARG] D:12 [U] 3.06 65.7
B:82 [TRP] D:11 [A] 4.23 92.86
B:82 [TRP] D:12 [U] 3.29 base/AA stacks 92.86
B:110 [ARG] D:12 [U] 4.69 97.21
B:111 [LEU] D:12 [U] 3.25 base:BB, base:BB 91.18
B:112 [TYR] D:12 [U] 3.85 95.5
B:113 [TYR] D:12 [U] 3.09 base:BB 59.35
B:113 [TYR] D:13 [A] 4.97 C:9 [U] 59.35
B:114 [HIS] C:9 [U] 3.23 D:13 [A] 57.62
B:114 [HIS] C:10 [A] 4.61 57.62
B:114 [HIS] D:12 [U] 3.93 57.62
B:114 [HIS] D:13 [A] 4.34 C:9 [U] 57.62
B:115 [TRP] C:9 [U] 3.86 D:13 [A] 30.0
B:115 [TRP] C:10 [A] 4.5 30.0
B:115 [TRP] D:12 [U] 3.52 30.0
B:115 [TRP] D:13 [A] 3.13 C:9 [U] base/AA stacks 30.0
B:120 [GLN] C:10 [A] 2.76 67.26
B:124 [ARG] C:10 [A] 4.94 82.74
B:168 [LYS] C:6 [G] 4.11 D:16 [C] 54.83
B:172 [ALA] C:7 [G] 4.01 D:15 [C] 14.97
B:172 [ALA] C:8 [G] 4.32 D:14 [C] 14.97
B:175 [ARG] C:7 [G] 3.07 D:15 [C] 48.82
B:175 [ARG] C:8 [G] 2.93 D:14 [C] 48.82
B:176 [ARG] C:9 [U] 3.27 D:13 [A] base/AA stacks 63.73
B:176 [ARG] C:10 [A] 2.76 63.73
B:179 [ARG] C:8 [G] 3.27 D:14 [C] 59.65
B:179 [ARG] C:9 [U] 2.31 D:13 [A] 59.65
B:183 [SER] C:10 [A] 3.62 69.07

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group67 5Z98_B_C,D B: Apolipoprotein b mRNA editing enzyme catalytic polypeptide-like protein 3h, Pan troglodytes (genetically engineered) C: Unidentified (genetically engineered) D: Unidentified (genetically engineered) B7T0U6 Cytidine deaminase-like ✘

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
5W3V_A_E,F 5Z98_B_C,D 0.66 0.9 1.03 0.36 Cytidine deaminase-like compare
5W3V_B_E,F 5Z98_B_C,D 0.64 0.95 0.86 0.55 Cytidine deaminase-like compare