Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6AZ3_m
|
6AZ3_1
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| m:98 [ARG] | 1:1267 [G] | 4.87 | 1:1361 [C] | 48.3 | ||
| m:98 [ARG] | 1:1268 [G] | 4.38 | 1:1360 [C] | 48.3 | ||
| m:98 [ARG] | 1:1361 [C] | 4.04 | 1:1267 [G] | 48.3 | ||
| m:98 [ARG] | 1:1362 [G] | 4.5 | 1:1266 [A] | 48.3 | ||
| m:108 [THR] | 1:1270 [U] | 3.88 | 39.9 | |||
| m:109 [ASN] | 1:1269 [G] | 4.04 | 1:1359 [C] | 57.9 | ||
| m:109 [ASN] | 1:1270 [U] | 3.26 | 57.9 | |||
| m:113 [LYS] | 1:1360 [C] | 3.67 | 1:1268 [G] | 32.0 | ||
| m:113 [LYS] | 1:1361 [C] | 3.26 | 1:1267 [G] | 32.0 | ||
| m:114 [ALA] | 1:1361 [C] | 3.0 | 1:1267 [G] | sugar:BB | 37.2 | |
| m:115 [CYS] | 1:1361 [C] | 4.91 | 1:1267 [G] | 71.0 | ||
| m:116 [GLY] | 1:1268 [G] | 3.87 | 1:1360 [C] | base:BB | 53.0 | |
| m:116 [GLY] | 1:1269 [G] | 3.12 | 1:1359 [C] | sugar:BB | 53.0 | |
| m:116 [GLY] | 1:1361 [C] | 3.95 | 1:1267 [G] | sugar:BB | 53.0 | |
| m:117 [HIS] | 1:1269 [G] | 3.22 | 1:1359 [C] | 52.8 | ||
| m:117 [HIS] | 1:1271 [G] | 3.57 | 1:1358 [C] | 52.8 | ||
| m:118 [CYS] | 1:1268 [G] | 4.1 | 1:1360 [C] | 66.3 | ||
| m:118 [CYS] | 1:1269 [G] | 4.26 | 1:1359 [C] | 66.3 | ||
| m:119 [SER] | 1:1269 [G] | 3.86 | 1:1359 [C] | 40.9 | ||
| m:119 [SER] | 1:1270 [U] | 4.4 | 40.9 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group68 | 6AZ3_m_1 | m: Ubiquitin-60s ribosomal protein l40, Leishmania donovani (natural) 1: rRNA alpha, Leishmania donovani (natural) | A0A3Q8ISR1 | Rubredoxin-related | Eukaryotic large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 1
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 6AZ3_m_1 | 7O7Y_Bm_B5 | 0.90 | 0.92 | 0.82 | 0.5 | Rubredoxin-related | Eukaryotic large subunit ribosomal RNA | compare |