Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6AZ3_m
|
6AZ3_4
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| m:89 [TYR] | 4:137 [G] | 4.72 | 4:153 [C] | 50.7 | ||
| m:93 [LYS] | 4:137 [G] | 3.39 | 4:153 [C] | 61.8 | ||
| m:99 [CYS] | 4:135 [C] | 4.5 | 4:155 [A] | 78.6 | ||
| m:100 [TYR] | 4:136 [G] | 4.65 | 4:154 [C] | 62.7 | ||
| m:101 [ALA] | 4:136 [G] | 3.87 | 4:154 [C] | 84.0 | ||
| m:102 [ARG] | 4:136 [G] | 3.05 | 4:154 [C] | 56.7 | ||
| m:102 [ARG] | 4:137 [G] | 3.34 | 4:153 [C] | 56.7 | ||
| m:102 [ARG] | 4:148 [C] | 4.17 | 56.7 | |||
| m:104 [PRO] | 4:147 [U] | 3.89 | 4:141 [A] | 58.8 | ||
| m:104 [PRO] | 4:148 [C] | 4.94 | 58.8 | |||
| m:106 [ARG] | 4:146 [C] | 4.04 | 4:142 [A] | 18.8 | ||
| m:111 [ARG] | 4:147 [U] | 3.65 | 4:141 [A] | 83.3 | ||
| m:111 [ARG] | 4:148 [C] | 3.14 | 83.3 | |||
| m:111 [ARG] | 4:149 [U] | 3.11 | 4:151 [A] | 83.3 | ||
| m:111 [ARG] | 4:150 [A] | 4.55 | 4:140 [G] | 83.3 | ||
| m:112 [LYS] | 4:135 [C] | 3.5 | 4:155 [A] | 70.1 | ||
| m:112 [LYS] | 4:136 [G] | 3.38 | 4:154 [C] | 70.1 | ||
| m:112 [LYS] | 4:148 [C] | 4.15 | 70.1 | |||
| m:117 [HIS] | 4:150 [A] | 3.79 | 4:140 [G] | 52.8 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group68 | 6AZ3_m_4 | m: Ubiquitin-60s ribosomal protein l40, Leishmania donovani (natural) 4: rRNA delta, Leishmania donovani (natural) | A0A3Q8ISR1 | Rubredoxin-related | Eukaryotic large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 1
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 6AZ3_m_4 | 7O7Y_Bm_B5 | 0.86 | 0.88 | 0.56 | 0.75 | Rubredoxin-related | Eukaryotic large subunit ribosomal RNA | compare |