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All interfaces > All interologs > Interface groups > group68 > 7O7Y_Bm_B5

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O7Y_Bm
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Bm:89 [TYR] B5:4433 [A] 4.26 B5:4449 [U] 48.57
Bm:93 [LYS] B5:4433 [A] 3.07 B5:4449 [U] 69.79
Bm:95 [ILE] B5:4219 [A] 3.66 B5:4228 [U] 93.32
Bm:95 [ILE] B5:4220 [A] 4.41 B5:4227 [U] 93.32
Bm:97 [ARG] B5:4169 [PSU] 3.5 base/AA stacks 81.24
Bm:97 [ARG] B5:4170 [A] 3.04 B5:4164 [G] 81.24
Bm:98 [M3L] B5:1884 [G] 3.68 B5:1976 [C] 56.0
Bm:98 [M3L] B5:4158 [C] 3.66 B5:4176 [G] 56.0
Bm:98 [M3L] B5:4159 [C] 4.41 B5:4175 [C] 56.0
Bm:98 [M3L] B5:4230 [A] 4.87 B5:4217 [PSU] 56.0
Bm:99 [CYS] B5:4218 [G] 4.37 B5:4229 [C] 52.17
Bm:99 [CYS] B5:4230 [A] 4.9 B5:4217 [PSU] 52.17
Bm:100 [TYR] B5:4170 [A] 4.27 B5:4164 [G] 27.4
Bm:100 [TYR] B5:4171 [G] 2.33 B5:4163 [C] 27.4
Bm:100 [TYR] B5:4218 [G] 2.16 B5:4229 [C] sugar:BB 27.4
Bm:100 [TYR] B5:4219 [A] 3.53 B5:4228 [U] 27.4
Bm:100 [TYR] B5:4229 [C] 2.73 B5:4218 [G] sugar:SC 27.4
Bm:100 [TYR] B5:4230 [A] 3.34 B5:4217 [PSU] 27.4
Bm:100 [TYR] B5:4432 [G] 4.84 B5:4450 [C] 27.4
Bm:101 [ALA] B5:4218 [G] 3.9 B5:4229 [C] 71.8
Bm:101 [ALA] B5:4432 [G] 3.82 B5:4450 [C] 71.8
Bm:102 [ARG] B5:4218 [G] 3.62 B5:4229 [C] 27.38
Bm:102 [ARG] B5:4219 [A] 2.84 B5:4228 [U] 27.38
Bm:102 [ARG] B5:4432 [G] 2.8 B5:4450 [C] 27.38
Bm:102 [ARG] B5:4433 [A] 3.92 B5:4449 [U] 27.38
Bm:102 [ARG] B5:4444 [C] 4.08 27.38
Bm:104 [HIS] B5:4442 [C] 3.97 B5:4438 [A] 19.56
Bm:104 [HIS] B5:4443 [U] 3.55 B5:4437 [A] 19.56
Bm:104 [HIS] B5:4444 [C] 4.35 19.56
Bm:106 [ARG] B5:4441 [C] 2.98 base:SC, sugar:SC 19.1
Bm:106 [ARG] B5:4442 [C] 3.15 B5:4438 [A] 19.1
Bm:108 [VAL] B5:1886 [U] 3.8 B5:4439 [C] 34.27
Bm:109 [ASN] B5:1885 [G] 3.37 B5:1975 [C] 45.78
Bm:109 [ASN] B5:1886 [U] 3.08 B5:4439 [C] 45.78
Bm:111 [ARG] B5:4443 [U] 3.28 B5:4437 [A] 72.82
Bm:111 [ARG] B5:4444 [C] 3.24 base/AA stacks 72.82
Bm:111 [ARG] B5:4445 [U] 3.18 B5:4447 [A] 72.82
Bm:112 [LYS] B5:4431 [U] 3.14 B5:4451 [A] 47.78
Bm:112 [LYS] B5:4432 [G] 3.05 B5:4450 [C] 47.78
Bm:112 [LYS] B5:4444 [C] 4.79 47.78
Bm:113 [LYS] B5:1868 [A] 3.35 B5:1993 [U] 25.48
Bm:113 [LYS] B5:1976 [C] 3.82 B5:1884 [G] 25.48
Bm:113 [LYS] B5:1977 [U] 3.18 B5:1883 [A] 25.48
Bm:114 [LYS] B5:1977 [U] 2.82 B5:1883 [A] sugar:BB 43.6
Bm:114 [LYS] B5:1978 [G] 4.36 B5:1882 [A] 43.6
Bm:114 [LYS] B5:4231 [C] 2.75 B5:4216 [G] sugar:SC 43.6
Bm:114 [LYS] B5:4430 [A] 3.0 B5:4452 [G] 43.6
Bm:114 [LYS] B5:4431 [U] 2.93 B5:4451 [A] 43.6
Bm:115 [CYS] B5:1977 [U] 3.46 B5:1883 [A] 56.47
Bm:116 [GLY] B5:1884 [G] 4.25 B5:1976 [C] 25.39
Bm:116 [GLY] B5:1885 [G] 3.04 B5:1975 [C] sugar:BB 25.39
Bm:116 [GLY] B5:1977 [U] 3.58 B5:1883 [A] 25.39
Bm:117 [HIS] B5:1885 [G] 3.44 B5:1975 [C] 36.67
Bm:117 [HIS] B5:1887 [G] 4.23 B5:1974 [C] 36.67
Bm:117 [HIS] B5:4446 [A] 4.89 B5:4436 [G] 36.67
Bm:118 [THR] B5:1884 [G] 4.52 B5:1976 [C] 54.59
Bm:118 [THR] B5:1885 [G] 4.69 B5:1975 [C] 54.59
Bm:119 [ASN] B5:1884 [G] 4.6 B5:1976 [C] 33.73
Bm:119 [ASN] B5:1885 [G] 3.05 B5:1975 [C] 33.73
Bm:119 [ASN] B5:1886 [U] 3.04 B5:4439 [C] 33.73
Bm:120 [ASN] B5:4159 [C] 4.61 B5:4175 [C] 40.03
Bm:122 [ARG] B5:4170 [A] 3.4 B5:4164 [G] 61.64
Bm:122 [ARG] B5:4219 [A] 2.69 B5:4228 [U] sugar:SC 61.64
Bm:122 [ARG] B5:4220 [A] 3.09 B5:4227 [U] 61.64
Bm:123 [PRO] B5:4220 [A] 4.83 B5:4227 [U] 37.78
Bm:124 [LYS] B5:4219 [A] 2.95 B5:4228 [U] 68.9
Bm:124 [LYS] B5:4220 [A] 2.71 B5:4227 [U] 68.9
Bm:124 [LYS] B5:4222 [C] 3.69 68.9
Bm:125 [LYS] B5:4170 [A] 3.31 B5:4164 [G] 30.99
Bm:125 [LYS] B5:4220 [A] 3.0 B5:4227 [U] 30.99
Bm:125 [LYS] B5:4221 [G] 3.4 B5:4167 [C] 30.99
Bm:126 [LYS] B5:4221 [G] 4.06 B5:4167 [C] 1.7
Bm:127 [VAL] B5:4223 [A] 4.41 B5:4353 [A] 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group68 7O7Y_Bm_B5 Bm: 60s ribosomal protein l40, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) Rubredoxin-related Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_m_4 7O7Y_Bm_B5 0.86 0.88 0.56 0.75 Rubredoxin-related Eukaryotic large subunit ribosomal RNA compare
6AZ3_m_1 7O7Y_Bm_B5 0.90 0.92 0.82 0.5 Rubredoxin-related Eukaryotic large subunit ribosomal RNA compare
6AZ3_m_2 7O7Y_Bm_B5 0.92 0.91 0.53 0.67 Rubredoxin-related Eukaryotic large subunit ribosomal RNA compare