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All interfaces > All interologs > Interface groups > group69 > 1RPU_A_C,D

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Licorice
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Licorice
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Chain
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1RPU_A
1RPU_C,D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:11 [ARG] C:9 [U] 3.48 D:32 [A] 66.89
A:11 [ARG] C:10 [C] 2.55 D:31 [C] 66.89
A:18 [ARG] D:22 [C] 4.1 C:19 [G] 69.28
A:18 [ARG] D:23 [G] 3.03 C:18 [C] 69.28
A:18 [ARG] D:24 [U] 4.96 C:17 [A] 69.28
A:19 [TRP] D:23 [G] 4.35 C:18 [C] 66.4
A:19 [TRP] D:24 [U] 4.84 C:17 [A] 66.4
A:36 [SER] D:22 [C] 3.76 C:19 [G] 99.0
A:36 [SER] D:23 [G] 4.94 C:18 [C] 99.0
A:37 [PRO] D:22 [C] 3.11 C:19 [G] sugar:BB 92.69
A:38 [SER] C:21 [U] 3.69 68.17
A:38 [SER] D:22 [C] 4.48 C:19 [G] 68.17
A:39 [TRP] C:19 [G] 2.88 D:22 [C] base/AA stacks 16.06
A:39 [TRP] C:20 [U] 3.19 16.06
A:39 [TRP] C:21 [U] 3.05 16.06
A:39 [TRP] D:22 [C] 3.37 C:19 [G] 16.06
A:40 [THR] C:20 [U] 2.45 sugar:SC 27.21
A:40 [THR] C:21 [U] 2.52 27.21
A:42 [TRP] D:22 [C] 3.03 C:19 [G] base/AA stacks 84.71
A:43 [ARG] C:20 [U] 3.17 sugar:SC, sugar:SC 83.69
A:60 [LYS] D:23 [G] 3.16 C:18 [C] 94.57
A:60 [LYS] D:24 [U] 4.71 C:17 [A] 94.57
A:62 [SER] C:10 [C] 4.72 D:31 [C] 70.87
A:62 [SER] C:11 [A] 3.32 D:30 [U] 70.87
A:66 [GLY] C:9 [U] 3.94 D:32 [A] 91.49
A:67 [LYS] C:8 [G] 3.3 D:33 [C] 78.39
A:67 [LYS] C:9 [U] 2.81 D:32 [A] 78.39
A:69 [VAL] C:9 [U] 4.88 D:32 [A] 86.52
A:69 [VAL] C:10 [C] 3.76 D:31 [C] 86.52
A:71 [LYS] C:11 [A] 3.93 D:30 [U] 94.57
A:73 [TYR] D:22 [C] 3.23 C:19 [G] 90.81
A:107 [GLN] D:34 [G] 3.44 C:7 [C] 96.18
A:107 [GLN] D:35 [C] 3.1 C:6 [G] 96.18
A:108 [VAL] D:34 [G] 3.33 C:7 [C] 52.25
A:109 [GLY] D:33 [C] 4.55 C:8 [G] 76.69
A:109 [GLY] D:34 [G] 3.33 C:7 [C] 76.69
A:110 [CYS] D:33 [C] 4.97 C:8 [G] 90.31
A:111 [THR] C:10 [C] 3.69 D:31 [C] 87.84
A:113 [SER] C:11 [A] 3.38 D:30 [U] 99.0
A:115 [ARG] C:12 [C] 2.93 D:29 [G] 95.88
A:115 [ARG] C:13 [G] 3.27 D:28 [C] 95.88
A:118 [GLY] C:12 [C] 4.39 D:29 [G] 91.49
A:118 [GLY] C:13 [G] 4.06 D:28 [C] 91.49
A:120 [SER] C:11 [A] 3.24 D:30 [U] sugar:SC 74.96
A:120 [SER] C:12 [C] 3.3 D:29 [G] 74.96
A:122 [THR] C:10 [C] 4.47 D:31 [C] 87.94
A:122 [THR] C:11 [A] 3.81 D:30 [U] 87.94
A:124 [SER] D:32 [A] 4.07 C:9 [U] 99.0
A:124 [SER] D:33 [C] 3.67 C:8 [G] sugar:SC 99.0
A:125 [GLY] D:33 [C] 3.38 C:8 [G] 91.49
A:125 [GLY] D:34 [G] 4.01 C:7 [C] 91.49
A:126 [GLY] D:33 [C] 4.11 C:8 [G] 91.49
A:126 [GLY] D:34 [G] 3.47 C:7 [C] 91.49

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group69 1RPU_A_C,D A: 19 kda protein, CaRNAtion italian ringspot virus (genetically engineered) C: N/A D: N/A Q66104 Tombusvirus P19 core protein, VP19 ✘

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1RPU_A_C,D 4KQ0_A_B,E 0.93 0.94 0.52 0.4 Tombusvirus P19 core protein, VP19 compare
1RPU_A_C,D 6BJV_A_C,D 0.86 0.94 0.51 0.67 Tombusvirus P19 core protein, VP19 compare
1RPU_A_C,D 4JNX_A_B,G 0.90 0.93 0.51 0.36 Tombusvirus P19 core protein, VP19 compare
1RPU_A_C,D 6BJG_A_C,D 0.95 0.93 0.57 0.69 Tombusvirus P19 core protein, VP19 compare