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All interfaces > All interologs > Interface groups > group69 > 4JNX_A_B,G

Interface analysis

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4JNX_A
4JNX_B,G
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:14 [SER] G:821 [G] 3.84 B:420 [C] 99.0
A:14 [SER] G:822 [C] 4.51 B:418 [U] 99.0
A:15 [PRO] G:821 [G] 2.82 B:420 [C] sugar:BB 92.88
A:16 [SER] G:821 [G] 4.48 B:420 [C] 64.91
A:17 [TRP] B:419 [G] 3.26 base/AA stacks 7.77
A:17 [TRP] B:420 [C] 3.29 G:821 [G] base/AA stacks 7.77
A:17 [TRP] G:821 [G] 3.14 B:420 [C] base/AA stacks 7.77
A:20 [TRP] G:821 [G] 3.31 B:420 [C] base/AA stacks 84.98
A:34 [PRO] G:821 [G] 3.85 B:420 [C] 76.81
A:35 [LEU] G:821 [G] 3.92 B:420 [C] 74.16
A:36 [GLY] G:821 [G] 4.07 B:420 [C] 91.7
A:38 [LYS] G:821 [G] 4.84 B:420 [C] 94.7
A:38 [LYS] G:822 [C] 3.17 B:418 [U] 94.7
A:44 [GLY] B:409 [U] 3.83 G:831 [C] sugar:BB 91.7
A:45 [LYS] B:408 [C] 3.16 G:832 [U] 76.0
A:45 [LYS] B:409 [U] 3.2 G:831 [C] 76.0
A:46 [VAL] B:409 [U] 4.47 G:831 [C] 84.82
A:47 [VAL] B:409 [U] 4.99 G:831 [C] 85.21
A:47 [VAL] B:410 [G] 4.58 G:830 [G] 85.21
A:49 [LYS] B:411 [C] 4.74 G:829 [U] 94.7
A:51 [TYR] G:821 [G] 2.71 B:420 [C] 91.02
A:51 [TYR] G:822 [C] 4.5 B:418 [U] 91.02
A:85 [GLN] G:833 [G] 3.2 B:407 [G] 96.26
A:85 [GLN] G:834 [C] 2.9 96.26
A:86 [ILE] G:833 [G] 3.4 B:407 [G] 62.88
A:87 [GLY] G:832 [U] 3.9 B:408 [C] 75.0
A:87 [GLY] G:833 [G] 3.27 B:407 [G] 75.0
A:88 [CYS] G:832 [U] 3.9 B:408 [C] 90.54
A:89 [THR] B:409 [U] 4.8 G:831 [C] 86.5
A:89 [THR] B:410 [G] 4.34 G:830 [G] 86.5
A:89 [THR] G:832 [U] 4.81 B:408 [C] 86.5
A:91 [SER] B:411 [C] 4.46 G:829 [U] 99.0
A:93 [ARG] B:412 [U] 3.25 G:828 [C] 95.99
A:93 [ARG] B:413 [G] 2.82 G:827 [G] 95.99
A:96 [GLY] B:413 [G] 4.22 G:827 [G] 91.7
A:98 [SER] B:411 [C] 3.95 G:829 [U] 71.66
A:98 [SER] B:412 [U] 3.11 G:828 [C] 71.66
A:100 [THR] B:411 [C] 4.19 G:829 [U] 86.62
A:102 [SER] G:831 [C] 3.76 B:409 [U] 99.0
A:102 [SER] G:832 [U] 3.63 B:408 [C] 99.0
A:103 [GLY] G:832 [U] 3.0 B:408 [C] 91.7
A:103 [GLY] G:833 [G] 3.91 B:407 [G] 91.7
A:104 [GLY] G:832 [U] 4.27 B:408 [C] 91.7
A:104 [GLY] G:833 [G] 3.53 B:407 [G] 91.7
A:106 [ARG] G:834 [C] 4.71 66.52

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group69 4JNX_A_B,G A: RNA silencing suppressor p19, Tomato bushy stunt virus (genetically engineered) B: N/A G: N/A P69517 Tombusvirus P19 core protein, VP19 ✘

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4JNX_A_B,G 4KQ0_A_B,E 0.96 0.98 0.28 0.36 Tombusvirus P19 core protein, VP19 compare
4JNX_A_B,G 6BJG_A_C,D 0.95 0.94 0.5 0.43 Tombusvirus P19 core protein, VP19 compare
1RPU_A_C,D 4JNX_A_B,G 0.90 0.93 0.51 0.36 Tombusvirus P19 core protein, VP19 compare
4JNX_A_B,G 6BJV_A_C,D 0.93 0.96 0.51 0.43 Tombusvirus P19 core protein, VP19 compare