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All interfaces > All interologs > Interface groups > group69 > 4KQ0_A_B,E

Interface analysis

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4KQ0_A
4KQ0_B,E
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:14 [SER] E:20 [G] 3.61 B:19 [C] 99.0
A:14 [SER] E:21 [G] 4.87 B:18 [C] 99.0
A:15 [PRO] E:20 [G] 3.17 B:19 [C] sugar:BB 93.45
A:16 [SER] E:20 [G] 4.62 B:19 [C] 66.22
A:17 [TRP] B:19 [C] 3.16 E:20 [G] base/AA stacks 7.46
A:17 [TRP] E:20 [G] 3.41 B:19 [C] base/AA stacks 7.46
A:20 [TRP] E:20 [G] 2.95 B:19 [C] base/AA stacks 85.98
A:34 [PRO] E:20 [G] 3.53 B:19 [C] 77.67
A:35 [LEU] E:20 [G] 4.54 B:19 [C] 75.05
A:36 [GLY] E:20 [G] 4.27 B:19 [C] 92.36
A:38 [LYS] E:20 [G] 2.86 B:19 [C] 95.13
A:38 [LYS] E:21 [G] 3.49 B:18 [C] 95.13
A:40 [SER] B:11 [G] 4.64 E:28 [C] 67.45
A:44 [GLY] B:9 [C] 3.74 E:30 [G] sugar:BB 92.36
A:45 [LYS] B:8 [G] 3.11 E:31 [C] 76.78
A:45 [LYS] B:9 [C] 3.64 E:30 [G] 76.78
A:45 [LYS] B:10 [G] 4.78 E:29 [G] 76.78
A:47 [VAL] B:10 [G] 4.24 E:29 [G] 85.72
A:49 [LYS] E:22 [C] 4.79 B:17 [G] 95.13
A:51 [TYR] E:20 [G] 2.72 B:19 [C] 91.73
A:84 [ASP] E:33 [G] 4.24 B:6 [C] 10.78
A:84 [ASP] E:34 [C] 4.51 B:5 [G] 10.78
A:85 [GLN] E:32 [G] 3.13 B:7 [G] sugar:BB 96.55
A:85 [GLN] E:33 [G] 3.09 B:6 [C] 96.55
A:86 [ILE] E:32 [G] 3.55 B:7 [G] 63.97
A:87 [GLY] E:31 [C] 4.02 B:8 [G] 75.88
A:87 [GLY] E:32 [G] 3.33 B:7 [G] 75.88
A:88 [CYS] E:31 [C] 4.21 B:8 [G] 91.28
A:89 [THR] B:10 [G] 3.8 E:29 [G] 86.96
A:89 [THR] E:31 [C] 4.74 B:8 [G] 86.96
A:91 [SER] B:10 [G] 4.88 E:29 [G] 99.0
A:91 [SER] B:11 [G] 3.56 E:28 [C] 99.0
A:93 [ARG] B:12 [C] 3.22 E:27 [G] 96.3
A:93 [ARG] B:13 [G] 2.77 E:26 [G] 96.3
A:96 [GLY] B:13 [G] 4.37 E:26 [G] 92.36
A:98 [SER] B:11 [G] 3.42 E:28 [C] sugar:SC 72.54
A:98 [SER] B:12 [C] 3.57 E:27 [G] 72.54
A:100 [THR] B:10 [G] 4.73 E:29 [G] 87.07
A:100 [THR] B:11 [G] 3.84 E:28 [C] 87.07
A:102 [SER] E:30 [G] 3.28 B:9 [C] sugar:SC 99.0
A:102 [SER] E:31 [C] 3.33 B:8 [G] sugar:SC 99.0
A:103 [GLY] E:31 [C] 3.15 B:8 [G] 92.36
A:103 [GLY] E:32 [G] 3.86 B:7 [G] 92.36
A:104 [GLY] E:31 [C] 4.41 B:8 [G] 92.36
A:104 [GLY] E:32 [G] 3.63 B:7 [G] 92.36
A:106 [ARG] E:33 [G] 4.97 B:6 [C] 67.54

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group69 4KQ0_A_B,E A: RNA silencing suppressor p19, Tomato bushy stunt virus (genetically engineered) B: N/A E: N/A P69517 Tombusvirus P19 core protein, VP19 ✘

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1RPU_A_C,D 4KQ0_A_B,E 0.93 0.94 0.52 0.4 Tombusvirus P19 core protein, VP19 compare
4JNX_A_B,G 4KQ0_A_B,E 0.96 0.98 0.28 0.36 Tombusvirus P19 core protein, VP19 compare
4KQ0_A_B,E 6BJV_A_C,D 0.93 0.97 0.5 0.2 Tombusvirus P19 core protein, VP19 compare
4KQ0_A_B,E 6BJG_A_C,D 0.95 0.95 0.46 0.2 Tombusvirus P19 core protein, VP19 compare