RNAprotDB

All interfaces > All interologs > Interface groups > group69 > 6BJG_A_C,D

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

6BJG_A
6BJG_C,D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:6 [GLN] C:8 [A] 4.61 D:33 [U] 82.49
A:11 [ARG] C:9 [U] 2.99 D:32 [A] 63.26
A:11 [ARG] C:10 [U] 2.49 D:31 [A] 63.26
A:15 [ASN] D:24 [U] 4.79 C:17 [A] 8.57
A:18 [ARG] D:22 [C] 3.89 C:19 [G] 65.85
A:18 [ARG] D:23 [G] 2.81 C:18 [C] 65.85
A:18 [ARG] D:24 [U] 4.36 C:17 [A] 65.85
A:19 [TRP] C:21 [U] 3.47 63.14
A:19 [TRP] D:23 [G] 3.47 C:18 [C] 63.14
A:19 [TRP] D:24 [U] 4.17 C:17 [A] 63.14
A:36 [SER] D:22 [C] 3.6 C:19 [G] 99.0
A:36 [SER] D:23 [G] 4.57 C:18 [C] 99.0
A:37 [PRO] D:22 [C] 3.03 C:19 [G] sugar:BB 92.08
A:38 [SER] C:21 [U] 3.4 64.74
A:38 [SER] D:22 [C] 4.15 C:19 [G] 64.74
A:39 [TRP] C:19 [G] 3.27 D:22 [C] base/AA stacks 7.38
A:39 [TRP] C:20 [U] 3.95 7.38
A:39 [TRP] C:21 [U] 3.03 7.38
A:39 [TRP] D:22 [C] 3.67 C:19 [G] 7.38
A:40 [THR] C:20 [U] 3.96 17.07
A:40 [THR] C:21 [U] 3.29 17.07
A:42 [TRP] D:22 [C] 3.28 C:19 [G] base/AA stacks 83.49
A:60 [LYS] D:22 [C] 4.5 C:19 [G] 94.13
A:60 [LYS] D:23 [G] 2.82 C:18 [C] 94.13
A:62 [SER] C:10 [U] 5.0 D:31 [A] 66.87
A:62 [SER] C:11 [C] 4.27 D:30 [G] 66.87
A:66 [GLY] C:9 [U] 3.73 D:32 [A] 90.78
A:67 [LYS] C:8 [A] 3.57 D:33 [U] 75.63
A:67 [LYS] C:9 [U] 3.16 D:32 [A] 75.63
A:69 [VAL] C:9 [U] 4.49 D:32 [A] 84.95
A:69 [VAL] C:10 [U] 3.86 D:31 [A] 84.95
A:71 [LYS] C:11 [C] 4.08 D:30 [G] 94.13
A:73 [TYR] D:22 [C] 3.42 C:19 [G] 90.03
A:107 [GLN] D:34 [A] 2.97 C:7 [U] sugar:BB 95.89
A:107 [GLN] D:35 [C] 2.63 C:6 [G] 95.89
A:108 [VAL] D:34 [A] 3.18 C:7 [U] 45.75
A:109 [GLY] D:33 [U] 3.88 C:8 [A] 74.23
A:109 [GLY] D:34 [A] 3.31 C:7 [U] 74.23
A:110 [CYS] D:33 [U] 4.43 C:8 [A] 89.5
A:111 [HIS] C:9 [U] 4.97 D:32 [A] 73.07
A:111 [HIS] C:10 [U] 3.27 D:31 [A] 73.07
A:113 [SER] C:10 [U] 4.95 D:31 [A] 88.02
A:113 [SER] C:11 [C] 3.48 D:30 [G] 88.02
A:115 [ARG] C:12 [C] 3.3 D:29 [G] 95.57
A:115 [ARG] C:13 [G] 3.54 D:28 [C] 95.57
A:115 [ARG] D:22 [C] 3.65 C:19 [G] 95.57
A:118 [GLY] C:13 [G] 4.54 D:28 [C] 90.78
A:120 [SER] C:11 [C] 3.37 D:30 [G] 72.21
A:120 [SER] C:12 [C] 3.5 D:29 [G] 72.21
A:122 [THR] C:10 [U] 4.78 D:31 [A] 86.48
A:122 [THR] C:11 [C] 3.86 D:30 [G] 86.48
A:124 [SER] D:32 [A] 3.4 C:9 [U] sugar:SC 99.0
A:124 [SER] D:33 [U] 3.51 C:8 [A] sugar:SC 99.0
A:125 [GLY] D:33 [U] 3.55 C:8 [A] 90.78
A:125 [GLY] D:34 [A] 3.99 C:7 [U] 90.78
A:126 [GLY] D:33 [U] 4.37 C:8 [A] 90.78
A:126 [GLY] D:34 [A] 3.5 C:7 [U] 90.78

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group69 6BJG_A_C,D A: RNA silencing suppressor p19, CaRNAtion italian ringspot virus (genetically engineered) C: Lampyridae (synthetic) D: Lampyridae (synthetic) Q66104 Tombusvirus P19 core protein, VP19 ✘

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1RPU_A_C,D 6BJG_A_C,D 0.95 0.93 0.57 0.69 Tombusvirus P19 core protein, VP19 compare
4JNX_A_B,G 6BJG_A_C,D 0.95 0.94 0.5 0.43 Tombusvirus P19 core protein, VP19 compare
4KQ0_A_B,E 6BJG_A_C,D 0.95 0.95 0.46 0.2 Tombusvirus P19 core protein, VP19 compare
6BJG_A_C,D 6BJV_A_C,D 0.98 0.97 0.24 0.9 Tombusvirus P19 core protein, VP19 compare