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All interfaces > All interologs > Interface groups > group69 > 6BJV_A_C,D

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6BJV_A
6BJV_C,D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:8 [ASN] C:9 [U] 4.29 D:32 [A] 46.52
A:11 [ARG] C:9 [U] 3.3 D:32 [A] 63.41
A:11 [ARG] C:10 [U] 2.74 D:31 [A] 63.41
A:15 [ASN] D:24 [U] 4.37 C:17 [A] 9.21
A:18 [ARG] D:22 [C] 3.86 C:19 [G] 66.12
A:18 [ARG] D:23 [G] 2.61 C:18 [C] 66.12
A:18 [ARG] D:24 [U] 4.52 C:17 [A] 66.12
A:19 [TRP] D:23 [G] 3.6 C:18 [C] 63.49
A:19 [TRP] D:24 [U] 4.19 C:17 [A] 63.49
A:36 [SER] D:22 [C] 3.67 C:19 [G] 99.0
A:36 [SER] D:23 [G] 4.61 C:18 [C] 99.0
A:37 [PRO] D:22 [C] 3.1 C:19 [G] sugar:BB 92.15
A:38 [SER] C:20 [U] 4.49 64.78
A:38 [SER] D:22 [C] 4.4 C:19 [G] 64.78
A:39 [TRP] C:19 [G] 3.11 D:22 [C] base/AA stacks 8.59
A:39 [TRP] C:20 [U] 3.6 8.59
A:39 [TRP] D:22 [C] 3.9 C:19 [G] 8.59
A:42 [TRP] D:22 [C] 3.44 C:19 [G] base/AA stacks 83.62
A:60 [LYS] D:22 [C] 4.73 C:19 [G] 94.18
A:60 [LYS] D:23 [G] 2.62 C:18 [C] 94.18
A:60 [LYS] D:24 [U] 4.62 C:17 [A] 94.18
A:62 [SER] C:10 [U] 4.12 D:31 [A] 67.19
A:62 [SER] C:11 [C] 3.25 D:30 [G] 67.19
A:66 [GLY] C:9 [U] 3.37 D:32 [A] 90.86
A:67 [LYS] C:8 [A] 4.16 D:33 [U] 75.94
A:67 [LYS] C:9 [U] 3.71 D:32 [A] 75.94
A:69 [VAL] C:9 [U] 4.15 D:32 [A] 85.07
A:69 [VAL] C:10 [U] 3.62 D:31 [A] 85.07
A:71 [LYS] C:11 [C] 3.68 D:30 [G] 94.18
A:73 [TYR] D:22 [C] 3.56 C:19 [G] 90.12
A:107 [GLN] D:34 [A] 3.22 C:7 [U] sugar:BB 95.91
A:107 [GLN] D:35 [C] 2.83 C:6 [G] 95.91
A:108 [VAL] D:34 [A] 3.18 C:7 [U] 46.55
A:109 [GLY] D:33 [U] 4.04 C:8 [A] 74.47
A:109 [GLY] D:34 [A] 3.51 C:7 [U] 74.47
A:110 [CYS] D:33 [U] 4.55 C:8 [A] 89.58
A:111 [THR] C:10 [U] 3.85 D:31 [A] 86.52
A:113 [SER] C:10 [U] 4.76 D:31 [A] 88.15
A:113 [SER] C:11 [C] 3.12 D:30 [G] 88.15
A:115 [ARG] C:12 [C] 3.2 D:29 [G] 95.61
A:115 [ARG] C:13 [G] 4.32 D:28 [C] 95.61
A:115 [ARG] D:22 [C] 3.32 C:19 [G] 95.61
A:115 [ARG] D:23 [G] 4.46 C:18 [C] 95.61
A:118 [GLY] C:12 [C] 4.97 D:29 [G] 90.86
A:118 [GLY] C:13 [G] 4.6 D:28 [C] 90.86
A:120 [SER] C:11 [C] 3.15 D:30 [G] 72.46
A:120 [SER] C:12 [C] 3.27 D:29 [G] 72.46
A:122 [THR] C:10 [U] 4.86 D:31 [A] 86.63
A:122 [THR] C:11 [C] 3.69 D:30 [G] 86.63
A:124 [SER] D:32 [A] 4.0 C:9 [U] 99.0
A:124 [SER] D:33 [U] 3.66 C:8 [A] 99.0
A:125 [GLY] D:33 [U] 3.73 C:8 [A] 90.86
A:125 [GLY] D:34 [A] 4.22 C:7 [U] 90.86
A:126 [GLY] D:33 [U] 4.38 C:8 [A] 90.86
A:126 [GLY] D:34 [A] 3.62 C:7 [U] 90.86
A:128 [ARG] D:35 [C] 4.66 C:6 [G] 66.29

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group69 6BJV_A_C,D A: RNA silencing suppressor p19, CaRNAtion italian ringspot virus (genetically engineered) C: Lampyridae (synthetic) D: Lampyridae (synthetic) Q66104 Tombusvirus P19 core protein, VP19 ✘

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6BJG_A_C,D 6BJV_A_C,D 0.98 0.97 0.24 0.9 Tombusvirus P19 core protein, VP19 compare
1RPU_A_C,D 6BJV_A_C,D 0.86 0.94 0.51 0.67 Tombusvirus P19 core protein, VP19 compare
4JNX_A_B,G 6BJV_A_C,D 0.93 0.96 0.51 0.43 Tombusvirus P19 core protein, VP19 compare
4KQ0_A_B,E 6BJV_A_C,D 0.93 0.97 0.5 0.2 Tombusvirus P19 core protein, VP19 compare