RNAprotDB

All interfaces > All interologs > Interface groups > group7 > 3FOZ_A_C

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

3FOZ_A
3FOZ_C
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:42 [ASP] C:37 [A] 2.92 base:SC, base:SC 99.0
A:43 [SER] C:36 [A] 3.65 93.47
A:43 [SER] C:37 [A] 2.88 93.47
A:44 [ALA] C:37 [A] 3.54 69.18
A:45 [LEU] C:37 [A] 4.07 89.69
A:47 [TYR] C:36 [A] 4.68 91.59
A:53 [GLY] C:37 [A] 3.69 91.69
A:54 [THR] C:37 [A] 3.18 base:BB 93.49
A:78 [ALA] C:35 [A] 4.88 37.75
A:79 [TYR] C:35 [A] 3.31 63.48
A:79 [TYR] C:36 [A] 3.65 63.48
A:80 [SER] C:34 [G] 3.17 85.59
A:80 [SER] C:35 [A] 3.57 85.59
A:80 [SER] C:36 [A] 4.07 85.59
A:81 [ALA] C:34 [G] 4.33 85.13
A:81 [ALA] C:36 [A] 4.49 85.13
A:82 [ALA] C:34 [G] 3.36 sugar:BB 48.66
A:107 [GLY] C:37 [A] 3.93 98.95
A:108 [THR] C:36 [A] 3.74 91.49
A:108 [THR] C:37 [A] 2.51 91.49
A:109 [MET] C:37 [A] 4.39 81.26
A:110 [LEU] C:32 [U] 3.85 C:38 [A] 86.16
A:110 [LEU] C:33 [U] 4.08 86.16
A:110 [LEU] C:36 [A] 3.17 86.16
A:111 [TYR] C:36 [A] 2.87 97.07
A:119 [LEU] C:33 [U] 3.8 65.78
A:119 [LEU] C:34 [G] 3.78 65.78
A:120 [SER] C:33 [U] 3.0 base:BB, base:SC 60.86
A:120 [SER] C:34 [G] 2.8 base:BB 60.86
A:121 [PRO] C:34 [G] 3.54 11.95
A:122 [LEU] C:33 [U] 3.78 45.5
A:122 [LEU] C:34 [G] 3.05 base:BB 45.5
A:123 [PRO] C:34 [G] 3.94 sugar:BB 77.27
A:124 [SER] C:34 [G] 3.48 40.12
A:125 [ALA] C:34 [G] 3.62 43.31
A:125 [ALA] C:35 [A] 3.56 43.31
A:130 [ARG] C:34 [G] 4.65 86.9
A:130 [ARG] C:35 [A] 3.2 base/AA stacks 86.9
A:134 [GLU] C:35 [A] 4.95 42.37
A:159 [ARG] C:32 [U] 4.95 C:38 [A] 57.58
A:159 [ARG] C:33 [U] 4.17 57.58
A:161 [HIS] C:40 [C] 3.72 C:30 [G] 74.85
A:161 [HIS] C:41 [C] 3.71 C:29 [G] 74.85
A:163 [ASN] C:39 [U] 4.91 C:31 [A] 74.82
A:163 [ASN] C:40 [C] 3.23 C:30 [G] 74.82
A:163 [ASN] C:41 [C] 3.6 C:29 [G] 74.82
A:164 [ASP] C:39 [U] 2.54 C:31 [A] sugar:SC 91.31
A:164 [ASP] C:40 [C] 3.84 C:30 [G] 91.31
A:165 [PRO] C:39 [U] 3.33 C:31 [A] 40.48
A:165 [PRO] C:40 [C] 3.5 C:30 [G] 40.48
A:166 [GLN] C:35 [A] 3.24 base/AA stacks 74.08
A:166 [GLN] C:36 [A] 3.56 74.08
A:166 [GLN] C:38 [A] 2.71 C:32 [U] base:SC, sugar:SC 74.08
A:166 [GLN] C:39 [U] 3.41 C:31 [A] sugar:BB 74.08
A:167 [ARG] C:31 [A] 3.92 C:39 [U] 96.59
A:167 [ARG] C:32 [U] 3.46 C:38 [A] base:SC 96.59
A:167 [ARG] C:33 [U] 2.78 96.59
A:167 [ARG] C:36 [A] 3.09 96.59
A:167 [ARG] C:38 [A] 2.88 C:32 [U] base:SC 96.59
A:167 [ARG] C:39 [U] 2.72 C:31 [A] base:SC 96.59
A:169 [SER] C:35 [A] 4.4 57.55
A:170 [ARG] C:34 [G] 2.81 98.62
A:170 [ARG] C:35 [A] 4.42 98.62
A:182 [LEU] C:33 [U] 4.27 48.47
A:186 [THR] C:33 [U] 3.5 41.88
A:207 [ARG] C:28 [G] 2.73 C:42 [C] 84.7
A:207 [ARG] C:29 [G] 3.33 C:41 [C] 84.7
A:211 [HIS] C:27 [G] 3.76 C:43 [C] 56.9
A:211 [HIS] C:28 [G] 3.33 C:42 [C] 56.9
A:242 [ASP] C:35 [A] 3.89 67.0
A:244 [PRO] C:35 [A] 3.98 60.18
A:244 [PRO] C:36 [A] 3.95 60.18
A:244 [PRO] C:37 [A] 4.64 60.18
A:247 [ARG] C:35 [A] 3.89 64.61
A:247 [ARG] C:37 [A] 3.82 64.61
A:247 [ARG] C:38 [A] 2.97 C:32 [U] sugar:SC 64.61
A:247 [ARG] C:39 [U] 3.9 C:31 [A] 64.61
A:248 [CYS] C:37 [A] 3.28 79.23
A:249 [VAL] C:37 [A] 3.48 base:BB 86.75
A:249 [VAL] C:38 [A] 4.21 C:32 [U] 86.75
A:252 [ARG] C:37 [A] 4.97 68.31
A:252 [ARG] C:38 [A] 2.98 C:32 [U] 68.31
A:252 [ARG] C:39 [U] 3.14 C:31 [A] 68.31
A:269 [TYR] C:10 [G] 4.62 C:25 [C] 64.15
A:269 [TYR] C:25 [C] 4.02 C:10 [G] 64.15
A:269 [TYR] C:26 [A] 3.24 C:44 [G] sugar:SC 64.15
A:273 [CYS] C:26 [A] 3.69 C:44 [G] 43.2
A:273 [CYS] C:27 [G] 3.96 C:43 [C] 43.2
A:276 [ARG] C:26 [A] 3.25 C:44 [G] 85.73
A:276 [ARG] C:27 [G] 3.0 C:43 [C] 85.73
A:277 [GLN] C:26 [A] 2.75 C:44 [G] 77.47
A:277 [GLN] C:27 [G] 2.91 C:43 [C] 77.47
A:278 [LEU] C:37 [A] 3.22 74.21
A:280 [LYS] C:28 [G] 3.53 C:42 [C] 91.21
A:280 [LYS] C:29 [G] 2.95 C:41 [C] 91.21
A:280 [LYS] C:30 [G] 3.96 C:40 [C] base:SC 91.21
A:281 [ARG] C:30 [G] 4.33 C:40 [C] 91.64
A:281 [ARG] C:31 [A] 3.69 C:39 [U] 91.64
A:281 [ARG] C:32 [U] 4.7 C:38 [A] 91.64
A:281 [ARG] C:37 [A] 4.31 91.64
A:281 [ARG] C:38 [A] 2.53 C:32 [U] 91.64
A:281 [ARG] C:39 [U] 3.21 C:31 [A] 91.64
A:281 [ARG] C:40 [C] 4.1 C:30 [G] 91.64
A:282 [GLN] C:37 [A] 4.93 98.95
A:284 [THR] C:30 [G] 3.39 C:40 [C] 93.82
A:284 [THR] C:31 [A] 3.55 C:39 [U] 93.82
A:284 [THR] C:32 [U] 3.71 C:38 [A] 93.82
A:285 [TRP] C:32 [U] 3.55 C:38 [A] base/AA stacks 88.19
A:285 [TRP] C:36 [A] 4.25 88.19
A:287 [ARG] C:29 [G] 2.95 C:41 [C] 88.01
A:287 [ARG] C:30 [G] 2.79 C:40 [C] 88.01

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group7 3FOZ_A_C A: tRNA delta(2)-isopentenylpyrophosphate transferase, Escherichia coli k-12 (genetically engineered) C: tRNA(phe) P16384 P-loop containing nucleoside triphosphate hydrolases & tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain tRNA ✘

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3FOZ_A_C 3FOZ_B_D 0.99 0.96 0.61 1.0 P-loop containing nucleoside triphosphate hydrolases & tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain tRNA compare