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All interfaces > All interologs > Interface groups > group70 > 1VQ8_3_0

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Protein

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Licorice
Surface

RNA

Cartoon
Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1VQ8_3
1VQ8_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
3:1 [MET] 0:2319 [C] 2.96 0:2420 [G] 98.88
3:1 [MET] 0:2320 [U] 2.94 98.88
3:1 [MET] 0:2380 [A] 4.12 98.88
3:2 [GLN] 0:2320 [U] 2.63 85.04
3:2 [GLN] 0:2321 [A] 4.75 0:2378 [U] 85.04
3:3 [MET] 0:2320 [U] 3.45 46.49
3:4 [PRO] 0:2320 [U] 3.54 96.91
3:7 [PHE] 0:2378 [U] 3.43 0:2321 [A] 58.36
3:7 [PHE] 0:2379 [G] 4.86 0:2408 [A] 58.36
3:8 [ASN] 0:2377 [U] 4.9 0:2323 [G] 57.87
3:8 [ASN] 0:2378 [U] 2.88 0:2321 [A] 57.87
3:8 [ASN] 0:2379 [G] 4.22 0:2408 [A] 57.87
3:9 [THR] 0:2378 [U] 4.95 0:2321 [A] 75.46
3:9 [THR] 0:2379 [G] 2.91 0:2408 [A] 75.46
3:9 [THR] 0:2381 [C] 3.81 0:2407 [G] 75.46
3:10 [TYR] 0:735 [C] 4.11 67.91
3:10 [TYR] 0:2379 [G] 4.7 0:2408 [A] 67.91
3:10 [TYR] 0:2381 [C] 3.48 0:2407 [G] 67.91
3:10 [TYR] 0:2382 [A] 3.38 0:2406 [U] 67.91
3:10 [TYR] 0:2407 [G] 3.34 0:2381 [C] 67.91
3:10 [TYR] 0:2408 [A] 3.2 0:2379 [G] 67.91
3:12 [PRO] 0:2382 [A] 3.93 0:2406 [U] 80.29
3:13 [HIS] 0:2436 [U] 4.64 0:2455 [A] 0.68
3:13 [HIS] 0:2437 [A] 3.53 0.68
3:15 [ASN] 0:735 [C] 3.6 69.33
3:15 [ASN] 0:2407 [G] 2.62 0:2381 [C] sugar:SC 69.33
3:15 [ASN] 0:2408 [A] 3.0 0:2379 [G] 69.33
3:16 [GLU] 0:2408 [A] 3.2 0:2379 [G] 65.54
3:16 [GLU] 0:2409 [C] 3.98 0:2418 [G] 65.54
3:17 [HIS] 0:2379 [G] 3.02 0:2408 [A] 90.38
3:17 [HIS] 0:2381 [C] 4.42 0:2407 [G] 90.38
3:17 [HIS] 0:2408 [A] 2.7 0:2379 [G] sugar:BB, sugar:SC 90.38
3:17 [HIS] 0:2409 [C] 3.25 0:2418 [G] 90.38
3:25 [VAL] 0:2434 [A] 4.93 0:2457 [U] 56.73
3:25 [VAL] 0:2435 [U] 3.51 0:2456 [A] 56.73
3:26 [ARG] 0:2434 [A] 4.03 0:2457 [U] 83.41
3:26 [ARG] 0:2435 [U] 4.05 0:2456 [A] 83.41
3:27 [SER] 0:2434 [A] 3.5 0:2457 [U] 33.81
3:28 [GLY] 0:2434 [A] 3.17 0:2457 [U] sugar:BB 58.92
3:28 [GLY] 0:2435 [U] 3.43 0:2456 [A] 58.92
3:29 [ARG] 0:1924 [A] 3.2 0:1915 [U] 42.44
3:29 [ARG] 0:1925 [G] 3.55 0:1914 [C] 42.44
3:29 [ARG] 0:2434 [A] 4.35 0:2457 [U] 42.44
3:29 [ARG] 0:2435 [U] 4.97 0:2456 [A] 42.44
3:30 [GLN] 0:1923 [G] 4.82 0:1916 [C] 57.54
3:30 [GLN] 0:1924 [A] 4.04 0:1915 [U] 57.54
3:30 [GLN] 0:2433 [A] 3.35 0:2458 [U] 57.54
3:30 [GLN] 0:2434 [A] 3.94 0:2457 [U] 57.54
3:31 [THR] 0:1923 [G] 2.55 0:1916 [C] sugar:BB 69.97
3:31 [THR] 0:1924 [A] 4.47 0:1915 [U] 69.97
3:31 [THR] 0:2434 [A] 4.76 0:2457 [U] 69.97
3:31 [THR] 0:2450 [C] 4.41 0:2442 [G] 69.97
3:31 [THR] 0:2451 [G] 2.43 0:2441 [U] 69.97
3:32 [GLY] 0:1923 [G] 4.09 0:1916 [C] 48.17
3:32 [GLY] 0:1924 [A] 4.9 0:1915 [U] 48.17
3:33 [MET] 0:1922 [A] 3.63 0:1917 [G] 62.31
3:33 [MET] 0:1923 [G] 3.85 0:1916 [C] 62.31
3:33 [MET] 0:2450 [C] 3.69 0:2442 [G] 62.31
3:33 [MET] 0:2451 [G] 3.57 0:2441 [U] 62.31
3:34 [LYS] 0:2433 [A] 3.58 0:2458 [U] 65.65
3:34 [LYS] 0:2434 [A] 3.8 0:2457 [U] 65.65
3:34 [LYS] 0:2451 [G] 3.46 0:2441 [U] 65.65
3:34 [LYS] 0:2452 [G] 3.95 0:2440 [C] 65.65
3:35 [TRP] 0:217 [C] 4.75 0:223 [G] 0.0
3:35 [TRP] 0:218 [C] 3.44 0:222 [A] 0.0
3:35 [TRP] 0:219 [G] 4.91 0:168 [C] 0.0
3:35 [TRP] 0:220 [C] 3.42 0.0
3:35 [TRP] 0:395 [A] 3.66 sugar:SC 0.0
3:35 [TRP] 0:396 [U] 3.82 0.0
3:35 [TRP] 0:2432 [C] 4.79 0:2459 [G] 0.0
3:35 [TRP] 0:2451 [G] 3.73 0:2441 [U] 0.0
3:35 [TRP] 0:2452 [G] 3.02 0:2440 [C] 0.0
3:36 [ILE] 0:2432 [C] 3.6 0:2459 [G] 82.88
3:36 [ILE] 0:2433 [A] 3.84 0:2458 [U] 82.88
3:36 [ILE] 0:2452 [G] 4.87 0:2440 [C] 82.88
3:38 [ARG] 0:395 [A] 4.7 86.6
3:38 [ARG] 0:396 [U] 2.76 base/AA stacks 86.6
3:38 [ARG] 0:397 [A] 4.97 86.6
3:38 [ARG] 0:2451 [G] 2.68 0:2441 [U] sugar:SC 86.6
3:38 [ARG] 0:2452 [G] 4.68 0:2440 [C] 86.6
3:39 [GLN] 0:217 [C] 4.81 0:223 [G] 58.71
3:39 [GLN] 0:218 [C] 2.81 0:222 [A] 58.71
3:39 [GLN] 0:219 [G] 3.11 0:168 [C] 58.71
3:39 [GLN] 0:220 [C] 4.12 58.71
3:42 [ARG] 0:218 [C] 4.73 0:222 [A] 72.73
3:42 [ARG] 0:391 [U] 4.92 0:398 [U] 72.73
3:42 [ARG] 0:395 [A] 3.22 72.73
3:42 [ARG] 0:396 [U] 3.07 72.73
3:43 [ASN] 0:170 [U] 4.82 0:221 [G] 62.26
3:43 [ASN] 0:218 [C] 3.26 0:222 [A] 62.26
3:43 [ASN] 0:219 [G] 4.82 0:168 [C] 62.26
3:44 [SER] 0:389 [G] 4.64 0:400 [C] 49.79
3:44 [SER] 0:390 [G] 4.71 0:399 [C] 49.79
3:45 [GLY] 0:389 [G] 4.42 0:400 [C] 68.78
3:45 [GLY] 0:390 [G] 3.62 0:399 [C] 68.78
3:45 [GLY] 0:2122 [C] 4.8 0:2272 [G] 68.78
3:46 [ILE] 0:389 [G] 3.56 0:400 [C] 4.0
3:46 [ILE] 0:390 [G] 2.72 0:399 [C] 4.0
3:46 [ILE] 0:2121 [G] 4.67 0:2273 [C] 4.0
3:46 [ILE] 0:2122 [C] 3.94 0:2272 [G] 4.0
3:47 [GLY] 0:2121 [G] 3.29 0:2273 [C] 98.59
3:47 [GLY] 0:2122 [C] 3.22 0:2272 [G] 98.59
3:48 [ASN] 0:169 [A] 2.86 sugar:SC 88.61
3:48 [ASN] 0:170 [U] 3.08 0:221 [G] sugar:SC 88.61
3:48 [ASN] 0:2120 [U] 2.79 0:2274 [A] sugar:SC 88.61
3:48 [ASN] 0:2121 [G] 3.89 0:2273 [C] 88.61
3:48 [ASN] 0:2468 [A] 3.08 base:SC, base:SC 88.61
3:49 [ASP] 0:170 [U] 4.0 0:221 [G] 46.39
3:49 [ASP] 0:2121 [G] 4.52 0:2273 [C] 46.39
3:50 [GLY] 0:169 [A] 4.59 86.15
3:50 [GLY] 0:170 [U] 3.16 0:221 [G] 86.15
3:50 [GLY] 0:2468 [A] 3.42 86.15
3:51 [LYS] 0:219 [G] 3.1 0:168 [C] 69.4
3:51 [LYS] 0:220 [C] 2.91 69.4
3:51 [LYS] 0:2431 [C] 3.44 69.4
3:51 [LYS] 0:2468 [A] 4.71 69.4
3:52 [PHE] 0:219 [G] 4.78 0:168 [C] 47.47
3:53 [SER] 0:2120 [U] 3.82 0:2274 [A] 56.02
3:53 [SER] 0:2121 [G] 2.75 0:2273 [C] 56.02
3:53 [SER] 0:2468 [A] 3.47 56.02
3:54 [LYS] 0:219 [G] 3.41 0:168 [C] sugar:SC 6.02
3:54 [LYS] 0:2467 [A] 4.58 6.02
3:54 [LYS] 0:2468 [A] 3.17 6.02
3:55 [VAL] 0:2120 [U] 4.83 0:2274 [A] 57.15
3:58 [GLY] 0:2460 [A] 3.34 0:2430 [A] 53.91
3:58 [GLY] 0:2461 [U] 3.48 0:2429 [A] 53.91
3:59 [ASP] 0:2459 [G] 4.99 0:2432 [C] 66.13
3:59 [ASP] 0:2460 [A] 3.54 0:2430 [A] 66.13
3:59 [ASP] 0:2461 [U] 2.85 0:2429 [A] 66.13
3:60 [LYS] 0:2316 [G] 4.6 0:2464 [C] 99.0
3:60 [LYS] 0:2427 [C] 3.58 0:2462 [G] 99.0
3:60 [LYS] 0:2428 [G] 2.65 0:2466 [G] base:SC 99.0
3:60 [LYS] 0:2460 [A] 2.68 0:2430 [A] 99.0
3:60 [LYS] 0:2461 [U] 3.46 0:2429 [A] 99.0
3:60 [LYS] 0:2462 [G] 2.79 0:2427 [C] base:SC 99.0
3:61 [PRO] 0:2316 [G] 3.44 0:2464 [C] 58.14
3:61 [PRO] 0:2317 [C] 3.85 0:2359 [G] 58.14
3:61 [PRO] 0:2427 [C] 4.26 0:2462 [G] 58.14
3:61 [PRO] 0:2462 [G] 3.1 0:2427 [C] 58.14
3:62 [THR] 0:2316 [G] 4.9 0:2464 [C] 88.56
3:62 [THR] 0:2317 [C] 2.66 0:2359 [G] 88.56
3:62 [THR] 0:2318 [C] 4.44 0:2421 [G] 88.56
3:62 [THR] 0:2459 [G] 4.96 0:2432 [C] 88.56
3:63 [LYS] 0:2459 [G] 3.27 0:2432 [C] 87.16
3:63 [LYS] 0:2460 [A] 2.68 0:2430 [A] 87.16
3:64 [LYS] 0:2428 [G] 3.26 0:2466 [G] 87.96
3:64 [LYS] 0:2458 [U] 3.48 0:2433 [A] 87.96
3:64 [LYS] 0:2459 [G] 2.88 0:2432 [C] 87.96
3:65 [THR] 0:2458 [U] 3.54 0:2433 [A] 56.94
3:66 [ASP] 0:2458 [U] 3.33 0:2433 [A] 66.05
3:68 [LYS] 0:2435 [U] 3.06 0:2456 [A] 73.94
3:68 [LYS] 0:2436 [U] 2.73 0:2455 [A] 73.94
3:70 [ARG] 0:2436 [U] 3.88 0:2455 [A] 52.28
3:70 [ARG] 0:2437 [A] 3.28 52.28
3:75 [GLY] 0:2437 [A] 4.61 49.09
3:76 [LYS] 0:2437 [A] 3.67 86.15
3:76 [LYS] 0:2438 [G] 3.03 0:2454 [C] 86.15
3:77 [ALA] 0:2436 [U] 2.68 0:2455 [A] sugar:BB 53.95
3:77 [ALA] 0:2437 [A] 3.0 53.95
3:78 [HIS] 0:2382 [A] 4.81 0:2406 [U] 49.42
3:78 [HIS] 0:2436 [U] 3.52 0:2455 [A] 49.42
3:79 [LEU] 0:2382 [A] 4.95 0:2406 [U] 38.82
3:79 [LEU] 0:2435 [U] 3.36 0:2456 [A] 38.82
3:79 [LEU] 0:2436 [U] 3.35 0:2455 [A] 38.82
3:79 [LEU] 0:2456 [A] 3.84 0:2435 [U] 38.82
3:79 [LEU] 0:2457 [U] 3.99 0:2434 [A] 38.82
3:80 [ARG] 0:2379 [G] 4.84 0:2408 [A] 67.09
3:80 [ARG] 0:2380 [A] 4.78 67.09
3:80 [ARG] 0:2381 [C] 3.54 0:2407 [G] 67.09
3:80 [ARG] 0:2382 [A] 3.33 0:2406 [U] 67.09
3:80 [ARG] 0:2457 [U] 3.06 0:2434 [A] sugar:BB 67.09
3:81 [GLU] 0:2382 [A] 4.87 0:2406 [U] 24.54
3:81 [GLU] 0:2457 [U] 3.4 0:2434 [A] 24.54
3:81 [GLU] 0:2458 [U] 3.9 0:2433 [A] 24.54
3:82 [GLY] 0:2457 [U] 3.6 0:2434 [A] 70.94
3:82 [GLY] 0:2458 [U] 2.95 0:2433 [A] 70.94
3:83 [TRP] 0:2319 [C] 4.04 0:2420 [G] 10.61
3:83 [TRP] 0:2380 [A] 4.02 10.61
3:83 [TRP] 0:2420 [G] 4.65 0:2319 [C] 10.61
3:84 [ARG] 0:2317 [C] 3.35 0:2359 [G] 98.54
3:84 [ARG] 0:2318 [C] 4.46 0:2421 [G] 98.54
3:84 [ARG] 0:2426 [G] 3.98 0:2360 [C] 98.54
3:84 [ARG] 0:2427 [C] 3.09 0:2462 [G] base/AA stacks 98.54
3:84 [ARG] 0:2428 [G] 2.95 0:2466 [G] 98.54
3:85 [ALA] 0:2318 [C] 3.63 0:2421 [G] 55.05
3:86 [GLY] 0:2317 [C] 4.67 0:2359 [G] 80.31
3:86 [GLY] 0:2318 [C] 2.66 0:2421 [G] 80.31
3:87 [ARG] 0:2318 [C] 4.76 0:2421 [G] 79.21
3:87 [ARG] 0:2319 [C] 4.94 0:2420 [G] 79.21
3:91 [GLN] 0:2320 [U] 2.58 sugar:SC 8.52
3:91 [GLN] 0:2321 [A] 2.94 0:2378 [U] 8.52

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group70 1VQ8_3_0 3: 50s ribosomal protein l44e, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P32411 Rubredoxin-related Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_3_0 7O7Y_Bo_B5 0.67 0.94 2.37 0.21 Rubredoxin-related compare
1VQ8_3_0 6AZ3_p_2 0.68 0.82 2.31 0.21 Rubredoxin-related compare
1VQ8_3_0 6AZ3_p_1 0.72 0.77 2.21 0.43 Rubredoxin-related compare
1VQ8_3_0 1YHQ_3_0 0.99 1.0 0.24 1.0 Rubredoxin-related Archaeal large subunit ribosomal RNA compare