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All interfaces > All interologs > Interface groups > group70 > 1VQ8_3_0 vs 6AZ3_p_1

Interface analysis


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Common contacts -

1VQ8_3
1VQ8_0
6AZ3_p
6AZ3_1
Conserved?
3:43 [ASN] 0:170 [U] p:46 [LYS] 1:42 [U] ✔
3:43 [ASN] 0:218 [C] p:46 [LYS] 1:90 [G] ✔
3:43 [ASN] 0:219 [G] p:46 [LYS] 1:91 [G] ✔
3:45 [GLY] 0:389 [G] p:49 [GLY] 1:314 [G] ✔
3:45 [GLY] 0:390 [G] p:49 [GLY] 1:315 [U] ✔
3:49 [ASP] 0:170 [U] p:53 [GLN] 1:42 [U] ✔
3:54 [LYS] 0:219 [G] p:56 [PRO] 1:91 [G] ✔
3:39 [GLN] 0:218 [C] p:42 [ARG] 1:90 [G] ✔
3:39 [GLN] 0:219 [G] p:42 [ARG] 1:91 [G] ✔
3:39 [GLN] 0:220 [C] p:42 [ARG] 1:92 [C] ✔
3:50 [GLY] 0:170 [U] p:54 [THR] 1:42 [U] ✔
3:44 [SER] 0:389 [G] p:48 [SER] 1:314 [G] ✔
3:44 [SER] 0:390 [G] p:48 [SER] 1:315 [U] ✔
3:35 [TRP] 0:217 [C] p:38 [ARG] 1:89 [C] ✔
3:35 [TRP] 0:395 [A] p:38 [ARG] 1:320 [G] ✔
3:35 [TRP] 0:396 [U] p:38 [ARG] 1:321 [A] ✔
3:38 [ARG] 0:396 [U] p:41 [ARG] 1:321 [A] ✔
3:51 [LYS] 0:219 [G] p:55 [LYS] 1:91 [G] ✔
3:51 [LYS] 0:220 [C] p:55 [LYS] 1:92 [C] ✔
3:46 [ILE] 0:389 [G] p:50 [TYR] 1:314 [G] ✔
3:46 [ILE] 0:390 [G] p:50 [TYR] 1:315 [U] ✔
3:42 [ARG] 0:218 [C] p:45 [ARG] 1:90 [G] ✔
3:42 [ARG] 0:395 [A] p:45 [ARG] 1:320 [G] ✔
3:42 [ARG] 0:396 [U] p:45 [ARG] 1:321 [A] ✔
3:39 [GLN] 0:217 [C] p:42 [ARG] 1:89 [C] ❌ 6AZ3_p_1
3:50 [GLY] 0:169 [A] p:54 [THR] 1:41 [A] ❌ 6AZ3_p_1
3:35 [TRP] 0:218 [C] p:38 [ARG] 1:90 [G] ❌ 6AZ3_p_1
3:35 [TRP] 0:219 [G] p:38 [ARG] 1:91 [G] ❌ 6AZ3_p_1
3:35 [TRP] 0:220 [C] p:38 [ARG] 1:92 [C] ❌ 6AZ3_p_1
3:38 [ARG] 0:395 [A] p:41 [ARG] 1:320 [G] ❌ 6AZ3_p_1
3:33 [MET] 0:396 [U] p:36 [PHE] 1:321 [A] ❌ 1VQ8_3_0
3:42 [ARG] 0:217 [C] p:45 [ARG] 1:89 [C] ❌ 1VQ8_3_0
3:47 [GLY] 0:170 [U] p:51 [GLY] 1:42 [U] ❌ 1VQ8_3_0
3:47 [GLY] 0:169 [A] p:51 [GLY] 1:41 [A] ❌ 1VQ8_3_0
3:49 [ASP] 0:169 [A] p:53 [GLN] 1:41 [A] ❌ 1VQ8_3_0
3:50 [GLY] 0:219 [G] p:54 [THR] 1:91 [G] ❌ 1VQ8_3_0
3:15 [ASN] 0:735 [C] p:18 [ASN] 1:819 [C] ❌ 6AZ3_p:18, 6AZ3_1:819 no longer at interface
3:38 [ARG] 0:397 [A] p:41 [ARG] 1:322 [A] ❌ 6AZ3_1:322 no longer at interface
3:10 [TYR] 0:735 [C] p:11 [HIS] 1:819 [C] ❌ 6AZ3_p:11, 6AZ3_1:819 no longer at interface
3:42 [ARG] 0:391 [U] p:45 [ARG] 1:316 [U] ❌ 6AZ3_1:316 no longer at interface
3:43 [ASN] 0:171 [C] p:46 [LYS] 1:43 [A] ❌ 1VQ8_0:171 no longer at interface
3:48 [ASN] 0:169 [A] p:52 [GLY] 1:41 [A] ❌ 6AZ3_p:52 no longer at interface
3:48 [ASN] 0:170 [U] p:52 [GLY] 1:42 [U] ❌ 6AZ3_p:52 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Rubredoxin-related 0.77 2.21 0.43 0.81 0.76 1.0 0.91 0.72 0.46 0.21 0.37


Other pairs involving 1VQ8_3_0 or 6AZ3_p_1

Total number of entries: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_3_0 6AZ3_p_1 0.72 0.77 2.21 0.43 Rubredoxin-related compare
1VQ8_3_0 1YHQ_3_0 0.99 1.0 0.24 1.0 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1VQ8_3_0 7O7Y_Bo_B5 0.67 0.94 2.37 0.21 Rubredoxin-related compare
1VQ8_3_0 6AZ3_p_2 0.68 0.82 2.31 0.21 Rubredoxin-related compare
1YHQ_3_0 6AZ3_p_1 0.71 0.77 2.21 0.43 Rubredoxin-related compare
6AZ3_p_1 7O7Y_Bo_B5 0.86 0.92 0.53 0.79 Rubredoxin-related Eukaryotic large subunit ribosomal RNA compare