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All interfaces > All interologs > Interface groups > group70 > 1VQ8_3_0 vs 6AZ3_p_2

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Common contacts -

1VQ8_3
1VQ8_0
6AZ3_p
6AZ3_2
Conserved?
3:4 [PRO] 0:2320 [U] p:5 [PRO] 2:1083 [U] ✔
3:66 [ASP] 0:2458 [U] p:69 [VAL] 2:1231 [A] ✔
3:78 [HIS] 0:2382 [A] p:81 [ARG] 2:1145 [U] ✔
3:78 [HIS] 0:2436 [U] p:81 [ARG] 2:1197 [G] ✔
3:60 [LYS] 0:2427 [C] p:63 [LYS] 2:1188 [C] ✔
3:60 [LYS] 0:2428 [G] p:63 [LYS] 2:1189 [G] ✔
3:60 [LYS] 0:2460 [A] p:63 [LYS] 2:1233 [G] ✔
3:60 [LYS] 0:2461 [U] p:63 [LYS] 2:1234 [U] ✔
3:60 [LYS] 0:2462 [G] p:63 [LYS] 2:1235 [G] ✔
3:15 [ASN] 0:2407 [G] p:18 [ASN] 2:1169 [A] ✔
3:15 [ASN] 0:2408 [A] p:18 [ASN] 2:1170 [C] ✔
3:49 [ASP] 0:2121 [G] p:53 [GLN] 2:668 [C] ✔
3:81 [GLU] 0:2457 [U] p:84 [VAL] 2:1230 [OMG] ✔
3:81 [GLU] 0:2458 [U] p:84 [VAL] 2:1231 [A] ✔
3:27 [SER] 0:2434 [A] p:30 [ALA] 2:1195 [U] ✔
3:8 [ASN] 0:2378 [U] p:9 [VAL] 2:1141 [U] ✔
3:8 [ASN] 0:2379 [G] p:9 [VAL] 2:1142 [G] ✔
3:79 [LEU] 0:2382 [A] p:82 [GLN] 2:1145 [U] ✔
3:79 [LEU] 0:2435 [U] p:82 [GLN] 2:1196 [U] ✔
3:79 [LEU] 0:2436 [U] p:82 [GLN] 2:1197 [G] ✔
3:79 [LEU] 0:2456 [A] p:82 [GLN] 2:1229 [A] ✔
3:79 [LEU] 0:2457 [U] p:82 [GLN] 2:1230 [OMG] ✔
3:68 [LYS] 0:2435 [U] p:71 [LYS] 2:1196 [U] ✔
3:68 [LYS] 0:2436 [U] p:71 [LYS] 2:1197 [G] ✔
3:63 [LYS] 0:2459 [G] p:66 [LYS] 2:1232 [OMG] ✔
3:63 [LYS] 0:2460 [A] p:66 [LYS] 2:1233 [G] ✔
3:25 [VAL] 0:2434 [A] p:28 [TYR] 2:1195 [U] ✔
3:25 [VAL] 0:2435 [U] p:28 [TYR] 2:1196 [U] ✔
3:83 [TRP] 0:2319 [C] p:86 [LYS] 2:1082 [C] ✔
3:83 [TRP] 0:2420 [G] p:86 [LYS] 2:1182 [G] ✔
3:59 [ASP] 0:2460 [A] p:62 [ALA] 2:1233 [G] ✔
3:59 [ASP] 0:2461 [U] p:62 [ALA] 2:1234 [U] ✔
3:31 [THR] 0:2434 [A] p:34 [ARG] 2:1195 [U] ✔
3:31 [THR] 0:2451 [G] p:34 [ARG] 2:1224 [A] ✔
3:64 [LYS] 0:2428 [G] p:67 [LYS] 2:1189 [G] ✔
3:64 [LYS] 0:2458 [U] p:67 [LYS] 2:1231 [A] ✔
3:64 [LYS] 0:2459 [G] p:67 [LYS] 2:1232 [OMG] ✔
3:87 [ARG] 0:2318 [C] p:90 [HIS] 2:1081 [C] ✔
3:29 [ARG] 0:2434 [A] p:32 [LYS] 2:1195 [U] ✔
3:80 [ARG] 0:2381 [C] p:83 [VAL] 2:1144 [U] ✔
3:80 [ARG] 0:2382 [A] p:83 [VAL] 2:1145 [U] ✔
3:61 [PRO] 0:2316 [G] p:64 [THR] 2:1079 [OMG] ✔
3:61 [PRO] 0:2317 [C] p:64 [THR] 2:1080 [U] ✔
3:61 [PRO] 0:2462 [G] p:64 [THR] 2:1235 [G] ✔
3:48 [ASN] 0:2120 [U] p:52 [GLY] 2:667 [OMU] ✔
3:48 [ASN] 0:2121 [G] p:52 [GLY] 2:668 [C] ✔
3:28 [GLY] 0:2434 [A] p:31 [GLY] 2:1195 [U] ✔
3:28 [GLY] 0:2435 [U] p:31 [GLY] 2:1196 [U] ✔
3:7 [PHE] 0:2378 [U] p:8 [LYS] 2:1141 [U] ✔
3:77 [ALA] 0:2436 [U] p:80 [ILE] 2:1197 [G] ✔
3:77 [ALA] 0:2437 [A] p:80 [ILE] 2:1198 [C] ✔
3:75 [GLY] 0:2437 [A] p:78 [LYS] 2:1198 [C] ✔
3:53 [SER] 0:2468 [A] p:56 [PRO] 2:1241 [A] ✔
3:30 [GLN] 0:2433 [A] p:33 [ALA] 2:1194 [U] ✔
3:30 [GLN] 0:2434 [A] p:33 [ALA] 2:1195 [U] ✔
3:54 [LYS] 0:2468 [A] p:57 [VAL] 2:1241 [A] ✔
3:62 [THR] 0:2317 [C] p:65 [THR] 2:1080 [U] ✔
3:32 [GLY] 0:1923 [G] p:35 [LEU] 2:471 [U] ✔
3:32 [GLY] 0:1924 [A] p:35 [LEU] 2:472 [U] ✔
3:50 [GLY] 0:2468 [A] p:54 [THR] 2:1241 [A] ✔
3:1 [MET] 0:2319 [C] p:2 [VAL] 2:1082 [C] ✔
3:1 [MET] 0:2320 [U] p:2 [VAL] 2:1083 [U] ✔
3:58 [GLY] 0:2461 [U] p:61 [LYS] 2:1234 [U] ✔
3:16 [GLU] 0:2408 [A] p:19 [ALA] 2:1170 [C] ✔
3:16 [GLU] 0:2409 [C] p:19 [ALA] 2:1171 [U] ✔
3:35 [TRP] 0:2451 [G] p:38 [ARG] 2:1224 [A] ✔
3:35 [TRP] 0:2452 [G] p:38 [ARG] 2:1225 [U] ✔
3:38 [ARG] 0:2451 [G] p:41 [ARG] 2:1224 [A] ✔
3:85 [ALA] 0:2318 [C] p:88 [THR] 2:1081 [C] ✔
3:76 [LYS] 0:2437 [A] p:79 [SER] 2:1198 [C] ✔
3:2 [GLN] 0:2320 [U] p:3 [ASN] 2:1083 [U] ✔
3:84 [ARG] 0:2317 [C] p:87 [ARG] 2:1080 [U] ✔
3:84 [ARG] 0:2318 [C] p:87 [ARG] 2:1081 [C] ✔
3:84 [ARG] 0:2427 [C] p:87 [ARG] 2:1188 [C] ✔
3:84 [ARG] 0:2428 [G] p:87 [ARG] 2:1189 [G] ✔
3:33 [MET] 0:1923 [G] p:36 [PHE] 2:471 [U] ✔
3:33 [MET] 0:2451 [G] p:36 [PHE] 2:1224 [A] ✔
3:3 [MET] 0:2320 [U] p:4 [TYR] 2:1083 [U] ✔
3:36 [ILE] 0:2432 [C] p:39 [GLY] 2:1193 [C] ✔
3:36 [ILE] 0:2433 [A] p:39 [GLY] 2:1194 [U] ✔
3:36 [ILE] 0:2452 [G] p:39 [GLY] 2:1225 [U] ✔
3:51 [LYS] 0:2468 [A] p:55 [LYS] 2:1241 [A] ✔
3:17 [HIS] 0:2379 [G] p:20 [HIS] 2:1142 [G] ✔
3:17 [HIS] 0:2408 [A] p:20 [HIS] 2:1170 [C] ✔
3:17 [HIS] 0:2409 [C] p:20 [HIS] 2:1171 [U] ✔
3:34 [LYS] 0:2433 [A] p:37 [ALA] 2:1194 [U] ✔
3:34 [LYS] 0:2434 [A] p:37 [ALA] 2:1195 [U] ✔
3:34 [LYS] 0:2451 [G] p:37 [ALA] 2:1224 [A] ✔
3:34 [LYS] 0:2452 [G] p:37 [ALA] 2:1225 [U] ✔
3:46 [ILE] 0:2121 [G] p:50 [TYR] 2:668 [C] ✔
3:46 [ILE] 0:2122 [C] p:50 [TYR] 2:669 [C] ✔
3:86 [GLY] 0:2317 [C] p:89 [LYS] 2:1080 [U] ✔
3:86 [GLY] 0:2318 [C] p:89 [LYS] 2:1081 [C] ✔
3:10 [TYR] 0:2381 [C] p:11 [HIS] 2:1144 [U] ✔
3:10 [TYR] 0:2382 [A] p:11 [HIS] 2:1145 [U] ✔
3:10 [TYR] 0:2407 [G] p:11 [HIS] 2:1169 [A] ✔
3:10 [TYR] 0:2408 [A] p:11 [HIS] 2:1170 [C] ✔
3:9 [THR] 0:2379 [G] p:10 [MET] 2:1142 [G] ✔
3:9 [THR] 0:2381 [C] p:10 [MET] 2:1144 [U] ✔
3:82 [GLY] 0:2457 [U] p:85 [LEU] 2:1230 [OMG] ❌ 6AZ3_p_2
3:82 [GLY] 0:2458 [U] p:85 [LEU] 2:1231 [A] ❌ 6AZ3_p_2
3:60 [LYS] 0:2316 [G] p:63 [LYS] 2:1079 [OMG] ❌ 6AZ3_p_2
3:55 [VAL] 0:2120 [U] p:58 [PHE] 2:667 [OMU] ❌ 6AZ3_p_2
3:81 [GLU] 0:2382 [A] p:84 [VAL] 2:1145 [U] ❌ 6AZ3_p_2
3:8 [ASN] 0:2377 [U] p:9 [VAL] 2:1140 [U] ❌ 6AZ3_p_2
3:47 [GLY] 0:2121 [G] p:51 [GLY] 2:668 [C] ❌ 6AZ3_p_2
3:47 [GLY] 0:2122 [C] p:51 [GLY] 2:669 [C] ❌ 6AZ3_p_2
3:83 [TRP] 0:2380 [A] p:86 [LYS] 2:1143 [A] ❌ 6AZ3_p_2
3:59 [ASP] 0:2459 [G] p:62 [ALA] 2:1232 [OMG] ❌ 6AZ3_p_2
3:31 [THR] 0:1923 [G] p:34 [ARG] 2:471 [U] ❌ 6AZ3_p_2
3:31 [THR] 0:1924 [A] p:34 [ARG] 2:472 [U] ❌ 6AZ3_p_2
3:87 [ARG] 0:2319 [C] p:90 [HIS] 2:1082 [C] ❌ 6AZ3_p_2
3:29 [ARG] 0:1924 [A] p:32 [LYS] 2:472 [U] ❌ 6AZ3_p_2
3:29 [ARG] 0:2435 [U] p:32 [LYS] 2:1196 [U] ❌ 6AZ3_p_2
3:80 [ARG] 0:2379 [G] p:83 [VAL] 2:1142 [G] ❌ 6AZ3_p_2
3:80 [ARG] 0:2380 [A] p:83 [VAL] 2:1143 [A] ❌ 6AZ3_p_2
3:80 [ARG] 0:2457 [U] p:83 [VAL] 2:1230 [OMG] ❌ 6AZ3_p_2
3:61 [PRO] 0:2427 [C] p:64 [THR] 2:1188 [C] ❌ 6AZ3_p_2
3:48 [ASN] 0:2468 [A] p:52 [GLY] 2:1241 [A] ❌ 6AZ3_p_2
3:7 [PHE] 0:2379 [G] p:8 [LYS] 2:1142 [G] ❌ 6AZ3_p_2
3:53 [SER] 0:2120 [U] p:56 [PRO] 2:667 [OMU] ❌ 6AZ3_p_2
3:53 [SER] 0:2121 [G] p:56 [PRO] 2:668 [C] ❌ 6AZ3_p_2
3:30 [GLN] 0:1923 [G] p:33 [ALA] 2:471 [U] ❌ 6AZ3_p_2
3:30 [GLN] 0:1924 [A] p:33 [ALA] 2:472 [U] ❌ 6AZ3_p_2
3:54 [LYS] 0:2467 [A] p:57 [VAL] 2:1240 [A] ❌ 6AZ3_p_2
3:62 [THR] 0:2316 [G] p:65 [THR] 2:1079 [OMG] ❌ 6AZ3_p_2
3:62 [THR] 0:2318 [C] p:65 [THR] 2:1081 [C] ❌ 6AZ3_p_2
3:62 [THR] 0:2459 [G] p:65 [THR] 2:1232 [OMG] ❌ 6AZ3_p_2
3:1 [MET] 0:2380 [A] p:2 [VAL] 2:1143 [A] ❌ 6AZ3_p_2
3:58 [GLY] 0:2460 [A] p:61 [LYS] 2:1233 [G] ❌ 6AZ3_p_2
3:35 [TRP] 0:2432 [C] p:38 [ARG] 2:1193 [C] ❌ 6AZ3_p_2
3:38 [ARG] 0:2452 [G] p:41 [ARG] 2:1225 [U] ❌ 6AZ3_p_2
3:76 [LYS] 0:2438 [G] p:79 [SER] 2:1199 [G] ❌ 6AZ3_p_2
3:2 [GLN] 0:2321 [A] p:3 [ASN] 2:1084 [A] ❌ 6AZ3_p_2
3:13 [HIS] 0:2436 [U] p:14 [ASP] 2:1197 [G] ❌ 6AZ3_p_2
3:13 [HIS] 0:2437 [A] p:14 [ASP] 2:1198 [C] ❌ 6AZ3_p_2
3:17 [HIS] 0:2381 [C] p:20 [HIS] 2:1144 [U] ❌ 6AZ3_p_2
3:10 [TYR] 0:2379 [G] p:11 [HIS] 2:1142 [G] ❌ 6AZ3_p_2
3:9 [THR] 0:2378 [U] p:10 [MET] 2:1141 [U] ❌ 6AZ3_p_2
3:13 [HIS] 0:2438 [G] p:14 [ASP] 2:1199 [G] ❌ 1VQ8_3_0
3:17 [HIS] 0:2378 [U] p:20 [HIS] 2:1141 [U] ❌ 1VQ8_3_0
3:25 [VAL] 0:2457 [U] p:28 [TYR] 2:1230 [OMG] ❌ 1VQ8_3_0
3:25 [VAL] 0:2458 [U] p:28 [TYR] 2:1231 [A] ❌ 1VQ8_3_0
3:31 [THR] 0:2433 [A] p:34 [ARG] 2:1194 [U] ❌ 1VQ8_3_0
3:31 [THR] 0:2452 [G] p:34 [ARG] 2:1225 [U] ❌ 1VQ8_3_0
3:33 [MET] 0:1924 [A] p:36 [PHE] 2:472 [U] ❌ 1VQ8_3_0
3:33 [MET] 0:2452 [G] p:36 [PHE] 2:1225 [U] ❌ 1VQ8_3_0
3:35 [TRP] 0:2433 [A] p:38 [ARG] 2:1194 [U] ❌ 1VQ8_3_0
3:39 [GLN] 0:2432 [C] p:42 [ARG] 2:1193 [C] ❌ 1VQ8_3_0
3:44 [SER] 0:2121 [G] p:47 [GLN] 2:668 [C] ❌ 1VQ8_3_0
3:47 [GLY] 0:2120 [U] p:51 [GLY] 2:667 [OMU] ❌ 1VQ8_3_0
3:49 [ASP] 0:2120 [U] p:53 [GLN] 2:667 [OMU] ❌ 1VQ8_3_0
3:49 [ASP] 0:2468 [A] p:53 [GLN] 2:1241 [A] ❌ 1VQ8_3_0
3:53 [SER] 0:2467 [A] p:56 [PRO] 2:1240 [A] ❌ 1VQ8_3_0
3:54 [LYS] 0:2120 [U] p:57 [VAL] 2:667 [OMU] ❌ 1VQ8_3_0
3:55 [VAL] 0:2460 [A] p:58 [PHE] 2:1233 [G] ❌ 1VQ8_3_0
3:55 [VAL] 0:2461 [U] p:58 [PHE] 2:1234 [U] ❌ 1VQ8_3_0
3:55 [VAL] 0:2468 [A] p:58 [PHE] 2:1241 [A] ❌ 1VQ8_3_0
3:59 [ASP] 0:2462 [G] p:62 [ALA] 2:1235 [G] ❌ 1VQ8_3_0
3:66 [ASP] 0:2457 [U] p:69 [VAL] 2:1230 [OMG] ❌ 1VQ8_3_0
3:7 [PHE] 0:2380 [A] p:8 [LYS] 2:1143 [A] ❌ 1VQ8_3_0
3:7 [PHE] 0:2320 [U] p:8 [LYS] 2:1083 [U] ❌ 1VQ8_3_0
3:78 [HIS] 0:2381 [C] p:81 [ARG] 2:1144 [U] ❌ 1VQ8_3_0
3:82 [GLY] 0:2380 [A] p:85 [LEU] 2:1143 [A] ❌ 1VQ8_3_0
3:83 [TRP] 0:2318 [C] p:86 [LYS] 2:1081 [C] ❌ 1VQ8_3_0
3:83 [TRP] 0:2427 [C] p:86 [LYS] 2:1188 [C] ❌ 1VQ8_3_0
3:84 [ARG] 0:2459 [G] p:87 [ARG] 2:1232 [OMG] ❌ 1VQ8_3_0
3:84 [ARG] 0:2460 [A] p:87 [ARG] 2:1233 [G] ❌ 1VQ8_3_0
3:85 [ALA] 0:2319 [C] p:88 [THR] 2:1082 [C] ❌ 1VQ8_3_0
3:85 [ALA] 0:2317 [C] p:88 [THR] 2:1080 [U] ❌ 1VQ8_3_0
3:86 [GLY] 0:2316 [G] p:89 [LYS] 2:1079 [OMG] ❌ 1VQ8_3_0
3:31 [THR] 0:2450 [C] p:34 [ARG] 2:1223 [C] ❌ 6AZ3_2:1223 no longer at interface
3:29 [ARG] 0:1925 [G] p:32 [LYS] 2:473 [C] ❌ 6AZ3_2:473 no longer at interface
3:84 [ARG] 0:2426 [G] p:87 [ARG] 2:1187 [G] ❌ 6AZ3_2:1187 no longer at interface
3:33 [MET] 0:2450 [C] p:36 [PHE] 2:1223 [C] ❌ 6AZ3_2:1223 no longer at interface
3:51 [LYS] 0:2431 [C] p:55 [LYS] 2:1192 [C] ❌ 6AZ3_2:1192 no longer at interface
3:46 [ILE] 0:2123 [A] p:50 [TYR] 2:670 [A] ❌ 1VQ8_0:2123 no longer at interface
3:56 [PRO] 0:2469 [A] p:59 [HIS] 2:1242 [U] ❌ 1VQ8_3:56, 1VQ8_0:2469 no longer at interface
3:56 [PRO] 0:2119 [C] p:59 [HIS] 2:666 [C] ❌ 1VQ8_3:56, 1VQ8_0:2119 no longer at interface
3:57 [GLY] 0:2463 [A] p:60 [LYS] 2:1236 [U] ❌ 1VQ8_3:57, 1VQ8_0:2463 no longer at interface
3:57 [GLY] 0:2469 [A] p:60 [LYS] 2:1242 [U] ❌ 1VQ8_3:57, 1VQ8_0:2469 no longer at interface
3:78 [HIS] 0:2383 [G] p:81 [ARG] 2:1146 [A] ❌ 1VQ8_0:2383 no longer at interface
3:83 [TRP] 0:2421 [G] p:86 [LYS] 2:1183 [G] ❌ 1VQ8_0:2421 no longer at interface
3:45 [GLY] 0:2122 [C] p:49 [GLY] 2:669 [C] ❌ 6AZ3_p:49 no longer at interface
3:26 [ARG] 0:2434 [A] p:29 [LYS] 2:1195 [U] ❌ 6AZ3_p:29 no longer at interface
3:26 [ARG] 0:2435 [U] p:29 [LYS] 2:1196 [U] ❌ 6AZ3_p:29 no longer at interface
3:70 [ARG] 0:2436 [U] p:73 [GLN] 2:1197 [G] ❌ 6AZ3_p:73 no longer at interface
3:70 [ARG] 0:2437 [A] p:73 [GLN] 2:1198 [C] ❌ 6AZ3_p:73 no longer at interface
3:91 [GLN] 0:2320 [U] p:94 [ASN] 2:1083 [U] ❌ 6AZ3_p:94 no longer at interface
3:91 [GLN] 0:2321 [A] p:94 [ASN] 2:1084 [A] ❌ 6AZ3_p:94 no longer at interface
3:65 [THR] 0:2458 [U] p:68 [ILE] 2:1231 [A] ❌ 6AZ3_p:68 no longer at interface
3:12 [PRO] 0:2382 [A] p:13 [GLY] 2:1145 [U] ❌ 6AZ3_p:13 no longer at interface
3:37 [ASP] 0:2433 [A] p:40 [LYS] 2:1194 [U] ❌ 1VQ8_3:37 no longer at interface
3:37 [ASP] 0:2432 [C] p:40 [LYS] 2:1193 [C] ❌ 1VQ8_3:37 no longer at interface
3:56 [PRO] 0:2120 [U] p:59 [HIS] 2:667 [OMU] ❌ 1VQ8_3:56 no longer at interface
3:56 [PRO] 0:2468 [A] p:59 [HIS] 2:1241 [A] ❌ 1VQ8_3:56 no longer at interface
3:57 [GLY] 0:2461 [U] p:60 [LYS] 2:1234 [U] ❌ 1VQ8_3:57 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Rubredoxin-related 0.82 2.31 0.21 0.81 0.81 0.92 0.85 0.68 0.57 0.26 0.27


Other pairs involving 1VQ8_3_0 or 6AZ3_p_2

Total number of entries: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_3_0 1YHQ_3_0 0.99 1.0 0.24 1.0 Rubredoxin-related Archaeal large subunit ribosomal RNA compare
1VQ8_3_0 6AZ3_p_1 0.72 0.77 2.21 0.43 Rubredoxin-related compare
1VQ8_3_0 6AZ3_p_2 0.68 0.82 2.31 0.21 Rubredoxin-related compare
1YHQ_3_0 6AZ3_p_2 0.68 0.82 2.38 0.21 Rubredoxin-related compare
6AZ3_p_2 7O7Y_Bo_B5 0.92 0.91 1.03 0.58 Rubredoxin-related Eukaryotic large subunit ribosomal RNA compare
1VQ8_3_0 7O7Y_Bo_B5 0.67 0.94 2.37 0.21 Rubredoxin-related compare