RNAprotDB

All interfaces > All interologs > Interface groups > group70 > 6AZ3_p_1

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

6AZ3_p
6AZ3_1
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
p:36 [PHE] 1:321 [A] 3.85 15.94
p:38 [ARG] 1:89 [C] 2.95 1:95 [G] 30.6
p:38 [ARG] 1:320 [G] 2.98 sugar:SC 30.6
p:38 [ARG] 1:321 [A] 4.46 30.6
p:41 [ARG] 1:321 [A] 2.6 base/AA stacks 87.57
p:42 [ARG] 1:90 [G] 3.29 1:94 [A] 66.62
p:42 [ARG] 1:91 [G] 3.99 1:40 [C] 66.62
p:42 [ARG] 1:92 [C] 3.33 66.62
p:45 [ARG] 1:89 [C] 4.4 1:95 [G] 78.44
p:45 [ARG] 1:90 [G] 3.04 1:94 [A] 78.44
p:45 [ARG] 1:320 [G] 3.31 78.44
p:45 [ARG] 1:321 [A] 4.44 78.44
p:46 [LYS] 1:42 [U] 2.66 1:93 [G] base:SC, sugar:SC 60.91
p:46 [LYS] 1:43 [A] 4.71 1:36 [U] 60.91
p:46 [LYS] 1:90 [G] 4.22 1:94 [A] 60.91
p:46 [LYS] 1:91 [G] 3.23 1:40 [C] 60.91
p:48 [SER] 1:314 [G] 3.72 1:325 [C] 57.19
p:48 [SER] 1:315 [U] 3.89 1:324 [G] 57.19
p:49 [GLY] 1:314 [G] 3.38 1:325 [C] 92.25
p:49 [GLY] 1:315 [U] 3.06 1:324 [G] 92.25
p:50 [TYR] 1:314 [G] 3.58 1:325 [C] 67.21
p:50 [TYR] 1:315 [U] 3.41 1:324 [G] 67.21
p:51 [GLY] 1:41 [A] 4.57 73.46
p:51 [GLY] 1:42 [U] 3.96 1:93 [G] 73.46
p:53 [GLN] 1:41 [A] 4.87 65.33
p:53 [GLN] 1:42 [U] 4.9 1:93 [G] 65.33
p:54 [THR] 1:42 [U] 3.74 1:93 [G] 71.64
p:54 [THR] 1:91 [G] 4.74 1:40 [C] 71.64
p:55 [LYS] 1:91 [G] 3.4 1:40 [C] 69.43
p:55 [LYS] 1:92 [C] 4.61 69.43
p:56 [PRO] 1:91 [G] 3.34 1:40 [C] 52.6

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group70 6AZ3_p_1 p: 60s ribosomal protein l44, putative, Leishmania donovani (natural) 1: rRNA alpha, Leishmania donovani (natural) E9BBL5 Rubredoxin-related Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_3_0 6AZ3_p_1 0.71 0.77 2.21 0.43 Rubredoxin-related compare
1VQ8_3_0 6AZ3_p_1 0.72 0.77 2.21 0.43 Rubredoxin-related compare
6AZ3_p_1 7O7Y_Bo_B5 0.86 0.92 0.53 0.79 Rubredoxin-related Eukaryotic large subunit ribosomal RNA compare