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All interfaces > All interologs > Interface groups > group70 > 6AZ3_p_2

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Licorice
Surface

RNA

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Licorice
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Chain
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Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_p
6AZ3_2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
p:2 [VAL] 2:1082 [C] 3.59 2:1182 [G] 94.6
p:2 [VAL] 2:1083 [U] 3.37 94.6
p:3 [ASN] 2:1083 [U] 2.77 68.9
p:4 [TYR] 2:1083 [U] 3.3 base/AA stacks 23.0
p:5 [PRO] 2:1083 [U] 3.49 88.9
p:8 [LYS] 2:1083 [U] 2.1 base:SC 38.7
p:8 [LYS] 2:1141 [U] 3.23 2:1084 [A] sugar:SC 38.7
p:8 [LYS] 2:1143 [A] 4.61 38.7
p:9 [VAL] 2:1141 [U] 3.49 2:1084 [A] sugar:BB 42.9
p:9 [VAL] 2:1142 [G] 3.99 2:1170 [C] 42.9
p:10 [MET] 2:1142 [G] 4.2 2:1170 [C] 66.4
p:10 [MET] 2:1144 [U] 3.22 2:1169 [A] 66.4
p:11 [HIS] 2:1144 [U] 3.85 2:1169 [A] 40.2
p:11 [HIS] 2:1145 [U] 4.65 2:1168 [G] 40.2
p:11 [HIS] 2:1169 [A] 3.37 2:1144 [U] sugar:SC 40.2
p:11 [HIS] 2:1170 [C] 3.2 2:1142 [G] 40.2
p:14 [ASP] 2:1199 [G] 4.41 2:1227 [C] 28.6
p:16 [ARG] 2:1200 [A] 3.39 base/AA stacks 31.7
p:18 [ASN] 2:1169 [A] 3.26 2:1144 [U] sugar:SC 43.9
p:18 [ASN] 2:1170 [C] 3.49 2:1142 [G] 43.9
p:19 [ALA] 2:1170 [C] 3.71 2:1142 [G] 53.8
p:19 [ALA] 2:1171 [U] 4.38 2:1180 [A] 53.8
p:20 [HIS] 2:1141 [U] 4.51 2:1084 [A] 93.3
p:20 [HIS] 2:1142 [G] 3.02 2:1170 [C] 93.3
p:20 [HIS] 2:1170 [C] 3.02 2:1142 [G] base:SC 93.3
p:20 [HIS] 2:1171 [U] 3.46 2:1180 [A] 93.3
p:28 [TYR] 2:1195 [U] 2.42 2:1230 [OMG] sugar:SC 42.7
p:28 [TYR] 2:1196 [U] 3.45 2:1229 [A] sugar:SC 42.7
p:28 [TYR] 2:1230 [OMG] 3.32 2:1195 [U] 42.7
p:28 [TYR] 2:1231 [A] 3.64 2:1194 [U] 42.7
p:30 [ALA] 2:1195 [U] 3.84 2:1230 [OMG] 40.6
p:31 [GLY] 2:1195 [U] 3.57 2:1230 [OMG] 71.1
p:31 [GLY] 2:1196 [U] 4.06 2:1229 [A] 71.1
p:32 [LYS] 2:1195 [U] 3.61 2:1230 [OMG] 47.2
p:33 [ALA] 2:1194 [U] 3.32 2:1231 [A] 38.9
p:33 [ALA] 2:1195 [U] 3.28 2:1230 [OMG] 38.9
p:34 [ARG] 2:1194 [U] 4.17 2:1231 [A] 68.8
p:34 [ARG] 2:1195 [U] 2.71 2:1230 [OMG] 68.8
p:34 [ARG] 2:1224 [A] 3.2 2:1214 [U] 68.8
p:34 [ARG] 2:1225 [U] 2.44 2:1213 [A] 68.8
p:35 [LEU] 2:471 [U] 4.95 2:466 [C] 48.7
p:35 [LEU] 2:472 [U] 3.24 2:465 [A] 48.7
p:36 [PHE] 2:471 [U] 3.23 2:466 [C] 15.9
p:36 [PHE] 2:472 [U] 3.97 2:465 [A] 15.9
p:36 [PHE] 2:1224 [A] 3.34 2:1214 [U] 15.9
p:36 [PHE] 2:1225 [U] 4.98 2:1213 [A] 15.9
p:37 [ALA] 2:1194 [U] 3.7 2:1231 [A] 68.2
p:37 [ALA] 2:1195 [U] 3.87 2:1230 [OMG] 68.2
p:37 [ALA] 2:1224 [A] 4.1 2:1214 [U] 68.2
p:37 [ALA] 2:1225 [U] 3.7 2:1213 [A] 68.2
p:38 [ARG] 2:1194 [U] 3.64 2:1231 [A] 30.6
p:38 [ARG] 2:1224 [A] 3.78 2:1214 [U] 30.6
p:38 [ARG] 2:1225 [U] 2.85 2:1213 [A] 30.6
p:39 [GLY] 2:1193 [C] 3.27 2:1232 [OMG] 89.3
p:39 [GLY] 2:1194 [U] 2.74 2:1231 [A] 89.3
p:39 [GLY] 2:1225 [U] 4.78 2:1213 [A] 89.3
p:40 [LYS] 2:1193 [C] 4.38 2:1232 [OMG] 60.5
p:40 [LYS] 2:1194 [U] 4.05 2:1231 [A] 60.5
p:41 [ARG] 2:1224 [A] 3.21 2:1214 [U] sugar:SC 87.5
p:42 [ARG] 2:1193 [C] 3.91 2:1232 [OMG] 66.6
p:47 [GLN] 2:668 [C] 4.98 2:1036 [G] 55.7
p:50 [TYR] 2:668 [C] 3.81 2:1036 [G] sugar:BB 67.2
p:50 [TYR] 2:669 [C] 3.86 2:1035 [G] 67.2
p:50 [TYR] 2:670 [A] 4.84 2:1033 [G] 67.2
p:51 [GLY] 2:667 [OMU] 3.36 2:1037 [A] 73.4
p:52 [GLY] 2:667 [OMU] 3.27 2:1037 [A] 85.0
p:52 [GLY] 2:668 [C] 3.33 2:1036 [G] 85.0
p:53 [GLN] 2:667 [OMU] 3.05 2:1037 [A] 65.3
p:53 [GLN] 2:668 [C] 3.14 2:1036 [G] 65.3
p:53 [GLN] 2:1241 [A] 2.74 base:BB 65.3
p:54 [THR] 2:1241 [A] 3.95 71.6
p:55 [LYS] 2:1241 [A] 3.73 69.4
p:56 [PRO] 2:1240 [A] 4.7 52.6
p:56 [PRO] 2:1241 [A] 3.32 52.6
p:57 [VAL] 2:667 [OMU] 4.47 2:1037 [A] 48.6
p:57 [VAL] 2:1241 [A] 3.1 sugar:BB 48.6
p:58 [PHE] 2:1233 [G] 3.61 2:1191 [U] 35.2
p:58 [PHE] 2:1234 [U] 3.5 2:1190 [A] 35.2
p:58 [PHE] 2:1241 [A] 3.95 35.2
p:59 [HIS] 2:666 [C] 4.97 2:1038 [G] 44.4
p:59 [HIS] 2:667 [OMU] 4.87 2:1037 [A] 44.4
p:59 [HIS] 2:1241 [A] 4.2 44.4
p:59 [HIS] 2:1242 [U] 3.89 44.4
p:60 [LYS] 2:1234 [U] 3.78 2:1190 [A] 61.5
p:60 [LYS] 2:1236 [U] 3.18 61.5
p:60 [LYS] 2:1242 [U] 3.38 61.5
p:61 [LYS] 2:1234 [U] 3.57 2:1190 [A] 67.5
p:62 [ALA] 2:1233 [G] 4.96 2:1191 [U] 67.8
p:62 [ALA] 2:1234 [U] 2.8 2:1190 [A] 67.8
p:62 [ALA] 2:1235 [G] 3.52 2:1188 [C] 67.8
p:63 [LYS] 2:1188 [C] 3.6 2:1235 [G] 99.0
p:63 [LYS] 2:1189 [G] 2.92 2:1239 [G] base:SC 99.0
p:63 [LYS] 2:1233 [G] 4.39 2:1191 [U] 99.0
p:63 [LYS] 2:1234 [U] 3.0 2:1190 [A] 99.0
p:63 [LYS] 2:1235 [G] 2.88 2:1188 [C] base:SC 99.0
p:64 [THR] 2:1079 [OMG] 4.38 2:1237 [C] 69.3
p:64 [THR] 2:1080 [U] 3.51 2:1122 [A] 69.3
p:64 [THR] 2:1235 [G] 4.82 2:1188 [C] 69.3
p:65 [THR] 2:1080 [U] 2.98 2:1122 [A] 89.9
p:66 [LYS] 2:1232 [OMG] 3.68 2:1193 [C] 96.7
p:66 [LYS] 2:1233 [G] 4.64 2:1191 [U] 96.7
p:67 [LYS] 2:1189 [G] 3.44 2:1239 [G] 88.5
p:67 [LYS] 2:1231 [A] 3.42 2:1194 [U] 88.5
p:67 [LYS] 2:1232 [OMG] 2.9 2:1193 [C] 88.5
p:69 [VAL] 2:1230 [OMG] 3.79 2:1195 [U] 65.2
p:69 [VAL] 2:1231 [A] 3.6 2:1194 [U] 65.2
p:71 [LYS] 2:1196 [U] 4.15 2:1229 [A] 53.6
p:71 [LYS] 2:1197 [G] 4.59 2:1228 [C] 53.6
p:78 [LYS] 2:1198 [C] 4.74 45.6
p:79 [SER] 2:1198 [C] 4.06 55.8
p:80 [ILE] 2:1197 [G] 3.18 2:1228 [C] 30.4
p:80 [ILE] 2:1198 [C] 3.48 30.4
p:81 [ARG] 2:1144 [U] 4.31 2:1169 [A] 34.8
p:81 [ARG] 2:1145 [U] 3.35 2:1168 [G] 34.8
p:81 [ARG] 2:1146 [A] 4.56 2:1167 [A] 34.8
p:81 [ARG] 2:1197 [G] 4.45 2:1228 [C] 34.8
p:82 [GLN] 2:1145 [U] 4.6 2:1168 [G] 20.2
p:82 [GLN] 2:1196 [U] 2.4 2:1229 [A] base:SC, sugar:SC 20.2
p:82 [GLN] 2:1197 [G] 3.41 2:1228 [C] 20.2
p:82 [GLN] 2:1229 [A] 4.47 2:1196 [U] 20.2
p:82 [GLN] 2:1230 [OMG] 3.57 2:1195 [U] 20.2
p:83 [VAL] 2:1144 [U] 3.71 2:1169 [A] 33.1
p:83 [VAL] 2:1145 [U] 4.47 2:1168 [G] 33.1
p:84 [VAL] 2:1230 [OMG] 3.25 2:1195 [U] 18.9
p:84 [VAL] 2:1231 [A] 3.88 2:1194 [U] 18.9
p:85 [LEU] 2:1143 [A] 3.99 0.0
p:86 [LYS] 2:1081 [C] 3.8 2:1183 [G] 26.9
p:86 [LYS] 2:1082 [C] 4.53 2:1182 [G] 26.9
p:86 [LYS] 2:1182 [G] 3.87 2:1082 [C] 26.9
p:86 [LYS] 2:1183 [G] 2.63 2:1081 [C] base:SC 26.9
p:86 [LYS] 2:1188 [C] 4.86 2:1235 [G] 26.9
p:87 [ARG] 2:1080 [U] 3.36 2:1122 [A] 99.0
p:87 [ARG] 2:1081 [C] 4.24 2:1183 [G] 99.0
p:87 [ARG] 2:1188 [C] 4.08 2:1235 [G] 99.0
p:87 [ARG] 2:1189 [G] 4.66 2:1239 [G] 99.0
p:87 [ARG] 2:1232 [OMG] 4.07 2:1193 [C] 99.0
p:87 [ARG] 2:1233 [G] 4.48 2:1191 [U] 99.0
p:88 [THR] 2:1080 [U] 4.88 2:1122 [A] 54.2
p:88 [THR] 2:1081 [C] 2.95 2:1183 [G] 54.2
p:88 [THR] 2:1082 [C] 4.27 2:1182 [G] 54.2
p:89 [LYS] 2:1079 [OMG] 4.91 2:1237 [C] 82.2
p:89 [LYS] 2:1080 [U] 2.95 2:1122 [A] 82.2
p:89 [LYS] 2:1081 [C] 3.02 2:1183 [G] 82.2
p:90 [HIS] 2:1081 [C] 4.7 2:1183 [G] 81.7
p:97 [LYS] 2:1083 [U] 3.27 76.7
p:97 [LYS] 2:1084 [A] 3.35 2:1141 [U] 76.7
p:97 [LYS] 2:1140 [U] 4.85 2:1086 [G] 76.7
p:97 [LYS] 2:1141 [U] 4.22 2:1084 [A] 76.7

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group70 6AZ3_p_2 p: 60s ribosomal protein l44, putative, Leishmania donovani (natural) 2: rRNA beta, Leishmania donovani (natural) E9BBL5 Rubredoxin-related Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_p_2 7O7Y_Bo_B5 0.92 0.91 1.03 0.58 Rubredoxin-related Eukaryotic large subunit ribosomal RNA compare
1VQ8_3_0 6AZ3_p_2 0.68 0.82 2.31 0.21 Rubredoxin-related compare
1YHQ_3_0 6AZ3_p_2 0.68 0.82 2.38 0.21 Rubredoxin-related compare