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All interfaces > All interologs > Interface groups > group70 > 7O7Y_Bo_B5

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Cartoon
Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O7Y_Bo
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Bo:2 [VAL] B5:3977 [C] 3.03 B5:4076 [G] 98.15
Bo:2 [VAL] B5:3978 [U] 3.28 98.15
Bo:3 [ASN] B5:3978 [U] 2.78 78.2
Bo:3 [ASN] B5:3979 [A] 4.19 B5:4036 [U] 78.2
Bo:4 [VAL] B5:3978 [U] 4.41 37.22
Bo:5 [PRO] B5:3978 [U] 3.3 93.99
Bo:8 [ARG] B5:3978 [U] 2.81 63.04
Bo:8 [ARG] B5:4036 [U] 4.61 B5:3979 [A] 63.04
Bo:8 [ARG] B5:4038 [A] 3.99 sugar:SC 63.04
Bo:9 [ARG] B5:4036 [U] 3.3 B5:3979 [A] 44.41
Bo:9 [ARG] B5:4037 [G] 4.38 B5:4064 [C] 44.41
Bo:9 [ARG] B5:4065 [C] 2.9 B5:4074 [G] 44.41
Bo:9 [ARG] B5:4066 [G] 3.92 B5:4073 [C] 44.41
Bo:10 [THR] B5:4037 [G] 3.52 B5:4064 [C] 67.93
Bo:10 [THR] B5:4039 [PSU] 2.74 B5:4063 [A] sugar:SC 67.93
Bo:11 [PHE] B5:4037 [G] 4.94 B5:4064 [C] 60.09
Bo:11 [PHE] B5:4039 [PSU] 3.33 B5:4063 [A] 60.09
Bo:11 [PHE] B5:4040 [C] 3.21 B5:4062 [G] base/AA stacks 60.09
Bo:11 [PHE] B5:4063 [A] 4.3 B5:4039 [PSU] 60.09
Bo:11 [PHE] B5:4064 [C] 3.47 B5:4037 [G] 60.09
Bo:13 [LYS] B5:4040 [C] 2.97 B5:4062 [G] sugar:SC 68.74
Bo:13 [LYS] B5:4041 [U] 3.64 B5:4061 [A] 68.74
Bo:14 [LYS] B5:4094 [A] 4.28 25.98
Bo:16 [GLY] B5:4064 [C] 3.41 B5:4037 [G] 56.83
Bo:17 [LYS] B5:4064 [C] 3.4 B5:4037 [G] 69.19
Bo:17 [LYS] B5:4065 [C] 3.9 B5:4074 [G] 69.19
Bo:18 [HIS] B5:4036 [U] 4.78 B5:3979 [A] 90.9
Bo:18 [HIS] B5:4037 [G] 2.77 B5:4064 [C] 90.9
Bo:18 [HIS] B5:4039 [PSU] 3.36 B5:4063 [A] 90.9
Bo:18 [HIS] B5:4064 [C] 2.62 B5:4037 [G] sugar:BB, sugar:SC 90.9
Bo:18 [HIS] B5:4065 [C] 3.67 B5:4074 [G] 90.9
Bo:26 [TYR] B5:4090 [U] 2.52 B5:4114 [G] sugar:SC 53.87
Bo:26 [TYR] B5:4091 [C] 3.25 B5:4113 [G] 53.87
Bo:26 [TYR] B5:4114 [G] 3.31 B5:4090 [U] 53.87
Bo:26 [TYR] B5:4115 [A] 4.06 B5:4089 [U] 53.87
Bo:27 [LYS] B5:4090 [U] 4.59 B5:4114 [G] 84.89
Bo:28 [LYS] B5:4089 [U] 3.6 B5:4115 [A] 47.0
Bo:28 [LYS] B5:4090 [U] 3.38 B5:4114 [G] 47.0
Bo:29 [GLY] B5:4090 [U] 3.04 B5:4114 [G] sugar:BB 65.1
Bo:29 [GLY] B5:4091 [C] 4.16 B5:4113 [G] 65.1
Bo:30 [LYS] B5:3463 [C] 3.86 B5:3454 [G] 50.43
Bo:30 [LYS] B5:4090 [U] 3.8 B5:4114 [G] 50.43
Bo:31 [ASP] B5:4089 [U] 2.43 B5:4115 [A] sugar:SC 56.23
Bo:31 [ASP] B5:4090 [U] 3.65 B5:4114 [G] 56.23
Bo:32 [SER] B5:4089 [U] 4.22 B5:4115 [A] 77.22
Bo:32 [SER] B5:4090 [U] 2.8 B5:4114 [G] 77.22
Bo:32 [SER] B5:4108 [A] 4.1 B5:4098 [U] 77.22
Bo:33 [LEU] B5:3462 [PSU] 4.42 B5:3455 [A] 42.96
Bo:34 [TYR] B5:295 [A] 4.05 43.84
Bo:34 [TYR] B5:3461 [U] 3.15 B5:3456 [A2M] 43.84
Bo:34 [TYR] B5:3462 [PSU] 3.53 B5:3455 [A] 43.84
Bo:34 [TYR] B5:4108 [A] 3.68 B5:4098 [U] 43.84
Bo:34 [TYR] B5:4109 [A] 4.64 B5:4097 [U] 43.84
Bo:35 [ALA] B5:4089 [U] 3.46 B5:4115 [A] 60.53
Bo:35 [ALA] B5:4090 [U] 4.09 B5:4114 [G] 60.53
Bo:35 [ALA] B5:4108 [A] 4.36 B5:4098 [U] 60.53
Bo:35 [ALA] B5:4109 [A] 3.56 B5:4097 [U] 60.53
Bo:36 [GLN] B5:294 [G] 3.21 7.07
Bo:36 [GLN] B5:295 [A] 2.98 7.07
Bo:36 [GLN] B5:4089 [U] 3.61 B5:4115 [A] 7.07
Bo:36 [GLN] B5:4108 [A] 4.0 B5:4098 [U] 7.07
Bo:36 [GLN] B5:4109 [A] 2.81 B5:4097 [U] 7.07
Bo:37 [GLY] B5:4088 [C] 3.11 B5:4116 [OMG] 87.56
Bo:37 [GLY] B5:4089 [U] 2.69 B5:4115 [A] 87.56
Bo:37 [GLY] B5:4109 [A] 4.85 B5:4097 [U] 87.56
Bo:38 [LYS] B5:4088 [C] 4.37 B5:4116 [OMG] 52.51
Bo:38 [LYS] B5:4089 [U] 3.94 B5:4115 [A] 52.51
Bo:39 [ARG] B5:294 [G] 4.83 89.7
Bo:39 [ARG] B5:295 [A] 2.55 sugar:SC base/AA stacks 89.7
Bo:39 [ARG] B5:4108 [A] 3.51 B5:4098 [U] sugar:SC 89.7
Bo:39 [ARG] B5:4109 [A] 4.77 B5:4097 [U] 89.7
Bo:40 [ARG] B5:89 [C] 4.89 B5:95 [G] 70.26
Bo:40 [ARG] B5:90 [G] 3.08 B5:94 [A] 70.26
Bo:40 [ARG] B5:91 [G] 4.14 B5:41 [C] 70.26
Bo:40 [ARG] B5:92 [C] 3.65 base/AA stacks 70.26
Bo:40 [ARG] B5:294 [G] 4.69 70.26
Bo:40 [ARG] B5:4088 [C] 4.44 B5:4116 [OMG] 70.26
Bo:43 [ARG] B5:290 [U] 3.15 B5:297 [U] base:SC 70.26
Bo:43 [ARG] B5:291 [U] 2.83 B5:293 [G] base:SC 70.26
Bo:43 [ARG] B5:294 [G] 2.91 70.26
Bo:43 [ARG] B5:296 [A] 3.5 70.26
Bo:43 [ARG] B5:297 [U] 3.24 B5:290 [U] base:SC 70.26
Bo:44 [LYS] B5:43 [U] 2.97 B5:93 [G] base:SC 50.14
Bo:44 [LYS] B5:90 [G] 4.13 B5:94 [A] 50.14
Bo:44 [LYS] B5:91 [G] 2.67 B5:41 [C] 50.14
Bo:46 [SER] B5:288 [G] 3.91 B5:299 [C] 40.15
Bo:46 [SER] B5:289 [C] 3.98 B5:298 [G] 40.15
Bo:47 [GLY] B5:288 [G] 3.12 B5:299 [C] 98.15
Bo:47 [GLY] B5:289 [C] 3.28 B5:298 [G] 98.15
Bo:48 [TYR] B5:288 [G] 3.59 B5:299 [C] 57.83
Bo:48 [TYR] B5:289 [C] 2.91 B5:298 [G] 57.83
Bo:48 [TYR] B5:3658 [C] 4.68 B5:3931 [G] 57.83
Bo:48 [TYR] B5:3659 [U] 3.21 B5:3930 [G] 57.83
Bo:48 [TYR] B5:3660 [A] 4.92 B5:3928 [G] 57.83
Bo:49 [GLY] B5:42 [A] 4.72 76.99
Bo:49 [GLY] B5:43 [U] 3.52 B5:93 [G] 76.99
Bo:49 [GLY] B5:3657 [OMU] 3.71 B5:3932 [A] 76.99
Bo:50 [GLY] B5:3657 [OMU] 3.56 B5:3932 [A] 87.67
Bo:50 [GLY] B5:3658 [C] 3.02 B5:3931 [G] 87.67
Bo:51 [GLN] B5:42 [A] 4.94 58.91
Bo:51 [GLN] B5:43 [U] 4.47 B5:93 [G] 58.91
Bo:51 [GLN] B5:3657 [OMU] 3.04 B5:3932 [A] 58.91
Bo:51 [GLN] B5:3658 [C] 3.37 B5:3931 [G] 58.91
Bo:51 [GLN] B5:4125 [A] 2.99 base:BB 58.91
Bo:52 [THR] B5:43 [U] 3.53 B5:93 [G] 76.28
Bo:52 [THR] B5:91 [G] 4.5 B5:41 [C] 76.28
Bo:52 [THR] B5:4125 [A] 4.04 76.28
Bo:53 [MLZ] B5:91 [G] 3.18 B5:41 [C] 70.45
Bo:53 [MLZ] B5:92 [C] 3.68 70.45
Bo:53 [MLZ] B5:4087 [C] 3.93 AI:76 [A] 70.45
Bo:53 [MLZ] B5:4088 [C] 4.47 B5:4116 [OMG] 70.45
Bo:53 [MLZ] B5:4125 [A] 3.28 70.45
Bo:54 [PRO] B5:91 [G] 3.36 B5:41 [C] 65.17
Bo:54 [PRO] B5:4125 [A] 3.45 65.17
Bo:55 [ILE] B5:3657 [OMU] 4.01 B5:3932 [A] 46.17
Bo:55 [ILE] B5:4125 [A] 2.98 sugar:BB 46.17
Bo:56 [PHE] B5:4117 [G] 3.42 B5:4086 [U] 42.57
Bo:56 [PHE] B5:4118 [U] 3.29 B5:4085 [A] 42.57
Bo:56 [PHE] B5:4125 [A] 4.15 42.57
Bo:57 [ARG] B5:3656 [C] 3.29 B5:3933 [G] 53.34
Bo:57 [ARG] B5:3657 [OMU] 2.94 B5:3932 [A] 53.34
Bo:57 [ARG] B5:4125 [A] 3.93 53.34
Bo:57 [ARG] B5:4126 [A] 3.76 53.34
Bo:58 [LYS] B5:1631 [C] 4.77 50.36
Bo:58 [LYS] B5:4118 [U] 3.33 B5:4085 [A] 50.36
Bo:58 [LYS] B5:4120 [U] 3.13 50.36
Bo:58 [LYS] B5:4126 [A] 3.33 50.36
Bo:59 [LYS] B5:4117 [G] 4.95 B5:4086 [U] 51.58
Bo:59 [LYS] B5:4118 [U] 3.68 B5:4085 [A] 51.58
Bo:60 [ALA] B5:4117 [G] 4.84 B5:4086 [U] 59.76
Bo:60 [ALA] B5:4118 [U] 2.7 B5:4085 [A] 59.76
Bo:60 [ALA] B5:4119 [G] 3.53 B5:4083 [C] 59.76
Bo:61 [LYS] B5:3974 [OMG] 4.97 B5:4121 [C] 99.0
Bo:61 [LYS] B5:4083 [C] 3.44 B5:4119 [G] 99.0
Bo:61 [LYS] B5:4084 [G] 2.91 B5:4123 [G] base:SC 99.0
Bo:61 [LYS] B5:4117 [G] 4.13 B5:4086 [U] 99.0
Bo:61 [LYS] B5:4118 [U] 2.75 B5:4085 [A] 99.0
Bo:61 [LYS] B5:4119 [G] 2.89 B5:4083 [C] base:SC 99.0
Bo:62 [THR] B5:3974 [OMG] 3.65 B5:4121 [C] 66.86
Bo:62 [THR] B5:3975 [U] 4.25 B5:4017 [A] 66.86
Bo:62 [THR] B5:4119 [G] 4.69 B5:4083 [C] 66.86
Bo:63 [THR] B5:3974 [OMG] 4.84 B5:4121 [C] 87.38
Bo:63 [THR] B5:3975 [U] 2.38 B5:4017 [A] 87.38
Bo:63 [THR] B5:4117 [G] 4.81 B5:4086 [U] 87.38
Bo:64 [LYS] B5:4116 [OMG] 2.73 B5:4088 [C] 85.56
Bo:64 [LYS] B5:4117 [G] 3.38 B5:4086 [U] 85.56
Bo:65 [LYS] B5:4083 [C] 4.78 B5:4119 [G] 83.99
Bo:65 [LYS] B5:4084 [G] 2.86 B5:4123 [G] 83.99
Bo:65 [LYS] B5:4115 [A] 3.63 B5:4089 [U] 83.99
Bo:65 [LYS] B5:4116 [OMG] 2.98 B5:4088 [C] 83.99
Bo:67 [VAL] B5:4114 [G] 4.28 B5:4090 [U] 54.85
Bo:67 [VAL] B5:4115 [A] 3.43 B5:4089 [U] 54.85
Bo:78 [ARG] B5:4093 [G] 4.6 B5:4111 [C] 45.16
Bo:79 [SER] B5:4093 [G] 3.88 B5:4111 [C] 44.49
Bo:80 [LYS] B5:4092 [U] 2.68 B5:4112 [A] sugar:BB 11.77
Bo:80 [LYS] B5:4093 [G] 3.15 B5:4111 [C] 11.77
Bo:81 [ARG] B5:4039 [PSU] 2.91 B5:4063 [A] sugar:SC 27.19
Bo:81 [ARG] B5:4040 [C] 3.55 B5:4062 [G] 27.19
Bo:81 [ARG] B5:4092 [U] 3.63 B5:4112 [A] 27.19
Bo:82 [MET] B5:4091 [C] 3.21 B5:4113 [G] 10.46
Bo:82 [MET] B5:4092 [U] 3.81 B5:4112 [A] 10.46
Bo:82 [MET] B5:4113 [G] 3.94 B5:4091 [C] 10.46
Bo:82 [MET] B5:4114 [G] 4.19 B5:4090 [U] 10.46
Bo:83 [LEU] B5:4038 [A] 4.85 31.43
Bo:83 [LEU] B5:4039 [PSU] 4.19 B5:4063 [A] 31.43
Bo:83 [LEU] B5:4040 [C] 4.27 B5:4062 [G] 31.43
Bo:83 [LEU] B5:4114 [G] 4.63 B5:4090 [U] 31.43
Bo:84 [ALA] B5:4114 [G] 3.56 B5:4090 [U] 0.0
Bo:84 [ALA] B5:4115 [A] 3.87 B5:4089 [U] 0.0
Bo:85 [ILE] B5:4038 [A] 4.45 0.8
Bo:86 [LYS] B5:3976 [C] 3.81 B5:4077 [G] 19.22
Bo:86 [LYS] B5:3977 [C] 4.27 B5:4076 [G] 19.22
Bo:86 [LYS] B5:4076 [G] 3.68 B5:3977 [C] 19.22
Bo:86 [LYS] B5:4077 [G] 2.83 B5:3976 [C] base:SC, base:SC 19.22
Bo:86 [LYS] B5:4083 [C] 4.73 B5:4119 [G] 19.22
Bo:87 [ARG] B5:3975 [U] 3.71 B5:4017 [A] 98.61
Bo:87 [ARG] B5:3976 [C] 4.25 B5:4077 [G] 98.61
Bo:87 [ARG] B5:4083 [C] 4.02 B5:4119 [G] base/AA stacks 98.61
Bo:87 [ARG] B5:4084 [G] 4.7 B5:4123 [G] 98.61
Bo:87 [ARG] B5:4116 [OMG] 4.38 B5:4088 [C] 98.61
Bo:87 [ARG] B5:4117 [G] 4.64 B5:4086 [U] 98.61
Bo:88 [CYS] B5:3976 [C] 3.14 B5:4077 [G] 63.35
Bo:89 [LYS] B5:3974 [OMG] 4.64 B5:4121 [C] 82.63
Bo:89 [LYS] B5:3975 [U] 3.66 B5:4017 [A] 82.63
Bo:89 [LYS] B5:3976 [C] 2.73 B5:4077 [G] 82.63
Bo:90 [HIS] B5:3976 [C] 3.66 B5:4077 [G] 68.07
Bo:90 [HIS] B5:3977 [C] 4.63 B5:4076 [G] 68.07
Bo:96 [ASP] B5:3979 [A] 4.3 B5:4036 [U] 41.48
Bo:97 [LYS] B5:3978 [U] 4.05 32.02
Bo:97 [LYS] B5:3979 [A] 3.24 B5:4036 [U] 32.02
Bo:98 [LYS] B5:3977 [C] 2.98 B5:4076 [G] sugar:SC 54.9
Bo:98 [LYS] B5:3978 [U] 3.63 54.9
Bo:98 [LYS] B5:3979 [A] 2.9 B5:4036 [U] 54.9
Bo:98 [LYS] B5:3980 [A] 3.6 54.9
Bo:100 [LYS] B5:3980 [A] 3.42 57.19
Bo:100 [LYS] B5:4031 [U] 3.21 B5:3985 [A] 57.19
Bo:100 [LYS] B5:4032 [C] 3.46 B5:3984 [G] 57.19

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group70 7O7Y_Bo_B5 Bo: El42, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) G1U344 Rubredoxin-related Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_3_0 7O7Y_Bo_B5 0.67 0.94 2.37 0.21 Rubredoxin-related compare
1YHQ_3_0 7O7Y_Bo_B5 0.67 0.94 2.39 0.21 Rubredoxin-related compare
6AZ3_p_1 7O7Y_Bo_B5 0.86 0.92 0.53 0.79 Rubredoxin-related Eukaryotic large subunit ribosomal RNA compare
6AZ3_p_2 7O7Y_Bo_B5 0.92 0.91 1.03 0.58 Rubredoxin-related Eukaryotic large subunit ribosomal RNA compare