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All interfaces > All interologs > Interface groups > group71 > 1VQ8_O_0

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Licorice
Surface

RNA

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Licorice
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Chain
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1VQ8_O
1VQ8_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
O:1 [SER] 0:654 [A] 3.88 0:751 [U] 67.77
O:1 [SER] 0:655 [U] 3.54 0:750 [A] 67.77
O:2 [LYS] 0:655 [U] 2.68 0:750 [A] 36.63
O:2 [LYS] 0:656 [G] 3.91 0:749 [C] 36.63
O:3 [THR] 0:655 [U] 3.08 0:750 [A] 65.82
O:3 [THR] 0:656 [G] 2.99 0:749 [C] 65.82
O:4 [ASN] 0:655 [U] 4.48 0:750 [A] 81.59
O:4 [ASN] 0:656 [G] 2.92 0:749 [C] 81.59
O:4 [ASN] 0:657 [G] 3.69 0:748 [C] 81.59
O:7 [LEU] 0:656 [G] 3.9 0:749 [C] 32.08
O:12 [ALA] 0:1277 [C] 3.42 34.48
O:15 [LYS] 0:1277 [C] 3.75 40.47
O:15 [LYS] 0:1278 [A] 2.75 40.47
O:16 [SER] 0:1277 [C] 3.5 57.07
O:19 [ARG] 0:1276 [U] 3.26 0:1280 [A] base/AA stacks 48.89
O:19 [ARG] 0:1277 [C] 2.73 48.89
O:19 [ARG] 0:1278 [A] 2.75 48.89
O:20 [SER] 0:1276 [U] 4.8 0:1280 [A] 45.19
O:22 [GLY] 0:710 [G] 4.72 0:718 [C] 51.23
O:23 [GLY] 0:710 [G] 3.92 0:718 [C] 69.67
O:24 [ALA] 0:709 [G] 3.83 0:719 [C] 16.81
O:24 [ALA] 0:710 [G] 2.97 0:718 [C] 16.81
O:25 [VAL] 0:709 [G] 2.56 0:719 [C] 73.32
O:25 [VAL] 0:710 [G] 3.42 0:718 [C] 73.32
O:28 [ASP] 0:708 [A] 2.66 0:720 [G] sugar:SC 51.07
O:28 [ASP] 0:709 [G] 3.59 0:719 [C] 51.07
O:32 [ARG] 0:936 [C] 4.08 0:1034 [G] 1.2
O:34 [GLU] 0:1279 [U] 4.88 60.01
O:35 [LYS] 0:655 [U] 4.23 0:750 [A] 53.92
O:35 [LYS] 0:935 [G] 4.78 0:1035 [C] 53.92
O:35 [LYS] 0:936 [C] 2.61 0:1034 [G] 53.92
O:35 [LYS] 0:937 [C] 4.94 0:1033 [C] 53.92
O:36 [PRO] 0:654 [A] 3.11 0:751 [U] 75.7
O:36 [PRO] 0:655 [U] 3.32 0:750 [A] 75.7
O:36 [PRO] 0:935 [G] 4.59 0:1035 [C] 75.7
O:37 [ARG] 0:655 [U] 2.92 0:750 [A] 61.59
O:37 [ARG] 0:656 [G] 2.91 0:749 [C] base/AA stacks 61.59
O:37 [ARG] 0:657 [G] 2.94 0:748 [C] base:SC 61.59
O:37 [ARG] 0:658 [C] 4.41 0:747 [G] 61.59
O:38 [ARG] 0:653 [C] 3.97 0:752 [G] 84.03
O:38 [ARG] 0:654 [A] 3.02 0:751 [U] 84.03
O:38 [ARG] 0:655 [U] 4.73 0:750 [A] 84.03
O:38 [ARG] 0:935 [G] 3.21 0:1035 [C] sugar:SC 84.03
O:39 [THR] 0:935 [G] 4.04 0:1035 [C] 46.99
O:39 [THR] 0:936 [C] 4.26 0:1034 [G] 46.99
O:42 [GLU] 0:659 [A] 2.93 base:SC 44.91
O:42 [GLU] 0:746 [A] 2.7 sugar:SC 44.91
O:42 [GLU] 0:747 [G] 4.29 0:658 [C] 44.91
O:44 [ASN] 0:660 [A] 4.68 99.0
O:44 [ASN] 0:745 [G] 3.38 99.0
O:44 [ASN] 0:746 [A] 2.9 base:SC, base:SC 99.0
O:46 [GLY] 0:700 [A] 3.99 60.67
O:46 [GLY] 0:745 [G] 3.31 60.67
O:47 [ARG] 0:721 [A] 3.81 72.52
O:47 [ARG] 0:722 [G] 2.66 0:706 [G] 72.52
O:47 [ARG] 0:745 [G] 3.61 72.52
O:50 [ARG] 0:700 [A] 2.76 sugar:SC 75.77
O:50 [ARG] 0:701 [U] 2.91 base/AA stacks 75.77
O:50 [ARG] 0:744 [G] 3.74 75.77
O:50 [ARG] 0:745 [G] 4.68 75.77
O:51 [TYR] 0:701 [U] 3.88 24.14
O:51 [TYR] 0:721 [A] 3.36 24.14
O:51 [TYR] 0:722 [G] 3.95 0:706 [G] 24.14
O:53 [GLN] 0:719 [C] 4.34 0:709 [G] 38.67
O:56 [GLU] 0:710 [G] 4.69 0:718 [C] 69.9
O:63 [LYS] 0:658 [C] 4.32 0:747 [G] 92.25
O:63 [LYS] 0:659 [A] 2.89 base:SC 92.25
O:65 [LEU] 0:659 [A] 3.46 98.31
O:65 [LEU] 0:660 [A] 3.64 98.31
O:65 [LEU] 0:746 [A] 3.46 98.31
O:66 [GLY] 0:660 [A] 2.83 83.15
O:66 [GLY] 0:746 [A] 4.83 83.15
O:67 [SER] 0:660 [A] 3.42 53.84
O:67 [SER] 0:745 [G] 3.92 53.84
O:67 [SER] 0:746 [A] 3.83 53.84
O:68 [GLY] 0:745 [G] 3.06 98.59
O:69 [VAL] 0:700 [A] 4.35 0.64
O:69 [VAL] 0:745 [G] 4.54 0.64
O:80 [ASP] 0:658 [C] 4.14 0:747 [G] 68.47
O:81 [PHE] 0:659 [A] 4.38 75.72
O:82 [SER] 0:659 [A] 3.48 98.8
O:82 [SER] 0:660 [A] 2.65 98.8
O:83 [GLY] 0:659 [A] 3.04 32.01
O:84 [THR] 0:659 [A] 4.91 38.15
O:84 [THR] 0:660 [A] 3.45 38.15
O:85 [ALA] 0:660 [A] 4.83 99.0
O:108 [GLY] 0:710 [G] 3.76 0:718 [C] 74.44
O:108 [GLY] 0:711 [G] 4.49 0:717 [C] 74.44
O:109 [SER] 0:710 [G] 3.7 0:718 [C] 70.81
O:109 [SER] 0:711 [G] 2.91 0:717 [C] 70.81
O:110 [HIS] 0:710 [G] 3.22 0:718 [C] 56.68
O:110 [HIS] 0:711 [G] 3.37 0:717 [C] 56.68
O:110 [HIS] 0:712 [C] 4.11 0:716 [G] 56.68
O:111 [VAL] 0:709 [G] 4.45 0:719 [C] 74.26
O:111 [VAL] 0:710 [G] 3.19 0:718 [C] sugar:BB, sugar:BB 74.26
O:112 [ARG] 0:709 [G] 3.49 0:719 [C] 66.24
O:112 [ARG] 0:719 [C] 2.7 0:709 [G] base:SC, sugar:SC 66.24
O:112 [ARG] 0:720 [G] 3.6 0:708 [A] sugar:SC 66.24
O:113 [VAL] 0:708 [A] 4.29 0:720 [G] 79.96
O:113 [VAL] 0:709 [G] 4.11 0:719 [C] 79.96
O:113 [VAL] 0:721 [A] 3.31 79.96
O:114 [ILE] 0:721 [A] 3.17 72.89
O:115 [ARG] 0:721 [A] 2.84 sugar:BB, sugar:BB 21.8
O:115 [ARG] 0:722 [G] 3.29 0:706 [G] 21.8

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group71 1VQ8_O_0 O: 50s ribosomal protein l18e, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P12733 Ribosomal proteins L15p and L18e Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_O_0 6AZ3_P_1 0.73 0.74 2.08 0.24 Ribosomal proteins L15p and L18e compare
1VQ8_O_0 7O7Y_BQ_B5 0.71 0.94 2.29 0.16 Ribosomal proteins L15p and L18e compare
1VQ8_O_0 1YHQ_O_0 0.99 1.0 0.32 0.93 Ribosomal proteins L15p and L18e Archaeal large subunit ribosomal RNA compare