Interface analysis
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Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
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StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Interface
show interface as licoriceCommon contacts -
1VQ8_O
|
1VQ8_0
|
7O7Y_BQ
|
7O7Y_B5
|
Conserved?
|
---|---|---|---|---|
O:3 [THR] | 0:655 [U] | BQ:21 [GLN] | B5:1293 [G] | ✔ |
O:19 [ARG] | 0:1276 [U] | BQ:37 [ARG] | B5:2026 [C] | ✔ |
O:19 [ARG] | 0:1277 [C] | BQ:37 [ARG] | B5:2027 [A] | ✔ |
O:50 [ARG] | 0:701 [U] | BQ:68 [ARG] | B5:1375 [A] | ✔ |
O:114 [ILE] | 0:721 [A] | BQ:139 [LEU] | B5:1413 [C] | ✔ |
O:44 [ASN] | 0:745 [G] | BQ:62 [SER] | B5:1457 [G] | ✔ |
O:110 [HIS] | 0:710 [G] | BQ:135 [GLY] | B5:1384 [C] | ✔ |
O:110 [HIS] | 0:711 [G] | BQ:135 [GLY] | B5:1385 [C] | ✔ |
O:42 [GLU] | 0:659 [A] | BQ:60 [PRO] | B5:1297 [G] | ✔ |
O:42 [GLU] | 0:746 [A] | BQ:60 [PRO] | B5:1458 [A] | ✔ |
O:12 [ALA] | 0:1277 [C] | BQ:30 [LYS] | B5:2027 [A] | ✔ |
O:28 [ASP] | 0:708 [A] | BQ:46 [VAL] | B5:1382 [A] | ✔ |
O:28 [ASP] | 0:709 [G] | BQ:46 [VAL] | B5:1383 [U] | ✔ |
O:108 [GLY] | 0:710 [G] | BQ:133 [GLY] | B5:1384 [C] | ✔ |
O:108 [GLY] | 0:711 [G] | BQ:133 [GLY] | B5:1385 [C] | ✔ |
O:35 [LYS] | 0:655 [U] | BQ:53 [MET] | B5:1293 [G] | ✔ |
O:35 [LYS] | 0:936 [C] | BQ:53 [MET] | B5:1647 [C] | ✔ |
O:35 [LYS] | 0:937 [C] | BQ:53 [MET] | B5:1648 [U] | ✔ |
O:51 [TYR] | 0:721 [A] | BQ:69 [LYS] | B5:1413 [C] | ✔ |
O:51 [TYR] | 0:722 [G] | BQ:69 [LYS] | B5:1414 [A] | ✔ |
O:63 [LYS] | 0:659 [A] | BQ:85 [THR] | B5:1297 [G] | ✔ |
O:81 [PHE] | 0:659 [A] | BQ:105 [VAL] | B5:1297 [G] | ✔ |
O:25 [VAL] | 0:709 [G] | BQ:43 [PHE] | B5:1383 [U] | ✔ |
O:25 [VAL] | 0:710 [G] | BQ:43 [PHE] | B5:1384 [C] | ✔ |
O:115 [ARG] | 0:721 [A] | BQ:140 [SER] | B5:1413 [C] | ✔ |
O:115 [ARG] | 0:722 [G] | BQ:140 [SER] | B5:1414 [A] | ✔ |
O:20 [SER] | 0:1276 [U] | BQ:38 [ARG] | B5:2026 [C] | ✔ |
O:46 [GLY] | 0:745 [G] | BQ:64 [SER] | B5:1457 [G] | ✔ |
O:2 [LYS] | 0:655 [U] | BQ:20 [SER] | B5:1293 [G] | ✔ |
O:2 [LYS] | 0:656 [G] | BQ:20 [SER] | B5:1294 [C] | ✔ |
O:56 [GLU] | 0:710 [G] | BQ:78 [LYS] | B5:1384 [C] | ✔ |
O:24 [ALA] | 0:709 [G] | BQ:42 [THR] | B5:1383 [U] | ✔ |
O:24 [ALA] | 0:710 [G] | BQ:42 [THR] | B5:1384 [C] | ✔ |
O:66 [GLY] | 0:660 [A] | BQ:88 [ASP] | B5:1298 [A] | ✔ |
O:66 [GLY] | 0:746 [A] | BQ:88 [ASP] | B5:1458 [A] | ✔ |
O:109 [SER] | 0:710 [G] | BQ:134 [ARG] | B5:1384 [C] | ✔ |
O:109 [SER] | 0:711 [G] | BQ:134 [ARG] | B5:1385 [C] | ✔ |
O:80 [ASP] | 0:658 [C] | BQ:104 [ARG] | B5:1296 [C] | ✔ |
O:68 [GLY] | 0:745 [G] | BQ:91 [ARG] | B5:1457 [G] | ✔ |
O:37 [ARG] | 0:655 [U] | BQ:55 [ARG] | B5:1293 [G] | ✔ |
O:37 [ARG] | 0:656 [G] | BQ:55 [ARG] | B5:1294 [C] | ✔ |
O:37 [ARG] | 0:657 [G] | BQ:55 [ARG] | B5:1295 [G] | ✔ |
O:37 [ARG] | 0:658 [C] | BQ:55 [ARG] | B5:1296 [C] | ✔ |
O:36 [PRO] | 0:654 [A] | BQ:54 [SER] | B5:1292 [U] | ✔ |
O:36 [PRO] | 0:655 [U] | BQ:54 [SER] | B5:1293 [G] | ✔ |
O:83 [GLY] | 0:659 [A] | BQ:107 [SER] | B5:1297 [G] | ✔ |
O:4 [ASN] | 0:656 [G] | BQ:22 [ASP] | B5:1294 [C] | ✔ |
O:4 [ASN] | 0:657 [G] | BQ:22 [ASP] | B5:1295 [G] | ✔ |
O:39 [THR] | 0:935 [G] | BQ:57 [ASN] | B5:1646 [G] | ✔ |
O:39 [THR] | 0:936 [C] | BQ:57 [ASN] | B5:1647 [C] | ✔ |
O:67 [SER] | 0:745 [G] | BQ:89 [ASP] | B5:1457 [G] | ✔ |
O:23 [GLY] | 0:710 [G] | BQ:41 [SER] | B5:1384 [C] | ✔ |
O:113 [VAL] | 0:708 [A] | BQ:138 [LEU] | B5:1382 [A] | ✔ |
O:113 [VAL] | 0:709 [G] | BQ:138 [LEU] | B5:1383 [U] | ✔ |
O:113 [VAL] | 0:721 [A] | BQ:138 [LEU] | B5:1413 [C] | ✔ |
O:38 [ARG] | 0:653 [C] | BQ:56 [THR] | B5:1291 [G] | ✔ |
O:38 [ARG] | 0:654 [A] | BQ:56 [THR] | B5:1292 [U] | ✔ |
O:38 [ARG] | 0:655 [U] | BQ:56 [THR] | B5:1293 [G] | ✔ |
O:7 [LEU] | 0:656 [G] | BQ:25 [LEU] | B5:1294 [C] | ✔ |
O:16 [SER] | 0:1277 [C] | BQ:34 [PHE] | B5:2027 [A] | ✔ |
O:111 [VAL] | 0:709 [G] | BQ:136 [THR] | B5:1383 [U] | ✔ |
O:111 [VAL] | 0:710 [G] | BQ:136 [THR] | B5:1384 [C] | ✔ |
O:47 [ARG] | 0:721 [A] | BQ:65 [ARG] | B5:1413 [C] | ✔ |
O:47 [ARG] | 0:722 [G] | BQ:65 [ARG] | B5:1414 [A] | ✔ |
O:47 [ARG] | 0:745 [G] | BQ:65 [ARG] | B5:1457 [G] | ✔ |
O:84 [THR] | 0:659 [A] | BQ:108 [ARG] | B5:1297 [G] | ✔ |
O:84 [THR] | 0:660 [A] | BQ:108 [ARG] | B5:1298 [A] | ✔ |
O:82 [SER] | 0:659 [A] | BQ:106 [THR] | B5:1297 [G] | ✔ |
O:82 [SER] | 0:660 [A] | BQ:106 [THR] | B5:1298 [A] | ✔ |
O:65 [LEU] | 0:659 [A] | BQ:87 [THR] | B5:1297 [G] | ✔ |
O:65 [LEU] | 0:660 [A] | BQ:87 [THR] | B5:1298 [A] | ✔ |
O:65 [LEU] | 0:746 [A] | BQ:87 [THR] | B5:1458 [A] | ✔ |
O:1 [SER] | 0:654 [A] | BQ:19 [LYS] | B5:1292 [U] | ✔ |
O:1 [SER] | 0:655 [U] | BQ:19 [LYS] | B5:1293 [G] | ✔ |
O:3 [THR] | 0:656 [G] | BQ:21 [GLN] | B5:1294 [C] | ❌ 7O7Y_BQ_B5 |
O:50 [ARG] | 0:700 [A] | BQ:68 [ARG] | B5:1374 [G] | ❌ 7O7Y_BQ_B5 |
O:50 [ARG] | 0:744 [G] | BQ:68 [ARG] | B5:1455 [A] | ❌ 7O7Y_BQ_B5 |
O:50 [ARG] | 0:745 [G] | BQ:68 [ARG] | B5:1457 [G] | ❌ 7O7Y_BQ_B5 |
O:32 [ARG] | 0:936 [C] | BQ:50 [ARG] | B5:1647 [C] | ❌ 7O7Y_BQ_B5 |
O:44 [ASN] | 0:660 [A] | BQ:62 [SER] | B5:1298 [A] | ❌ 7O7Y_BQ_B5 |
O:44 [ASN] | 0:746 [A] | BQ:62 [SER] | B5:1458 [A] | ❌ 7O7Y_BQ_B5 |
O:42 [GLU] | 0:747 [G] | BQ:60 [PRO] | B5:1459 [G] | ❌ 7O7Y_BQ_B5 |
O:35 [LYS] | 0:935 [G] | BQ:53 [MET] | B5:1646 [G] | ❌ 7O7Y_BQ_B5 |
O:51 [TYR] | 0:701 [U] | BQ:69 [LYS] | B5:1375 [A] | ❌ 7O7Y_BQ_B5 |
O:63 [LYS] | 0:658 [C] | BQ:85 [THR] | B5:1296 [C] | ❌ 7O7Y_BQ_B5 |
O:53 [GLN] | 0:719 [C] | BQ:71 [LYS] | B5:1411 [C] | ❌ 7O7Y_BQ_B5 |
O:46 [GLY] | 0:700 [A] | BQ:64 [SER] | B5:1374 [G] | ❌ 7O7Y_BQ_B5 |
O:34 [GLU] | 0:1279 [U] | BQ:52 [PHE] | B5:2111 [A] | ❌ 7O7Y_BQ_B5 |
O:15 [LYS] | 0:1277 [C] | BQ:33 [ARG] | B5:2027 [A] | ❌ 7O7Y_BQ_B5 |
O:36 [PRO] | 0:935 [G] | BQ:54 [SER] | B5:1646 [G] | ❌ 7O7Y_BQ_B5 |
O:4 [ASN] | 0:655 [U] | BQ:22 [ASP] | B5:1293 [G] | ❌ 7O7Y_BQ_B5 |
O:67 [SER] | 0:660 [A] | BQ:89 [ASP] | B5:1298 [A] | ❌ 7O7Y_BQ_B5 |
O:67 [SER] | 0:746 [A] | BQ:89 [ASP] | B5:1458 [A] | ❌ 7O7Y_BQ_B5 |
O:38 [ARG] | 0:935 [G] | BQ:56 [THR] | B5:1646 [G] | ❌ 7O7Y_BQ_B5 |
O:69 [VAL] | 0:700 [A] | BQ:92 [VAL] | B5:1374 [G] | ❌ 7O7Y_BQ_B5 |
O:69 [VAL] | 0:745 [G] | BQ:92 [VAL] | B5:1457 [G] | ❌ 7O7Y_BQ_B5 |
O:112 [ARG] | 0:709 [G] | BQ:137 [VAL] | B5:1383 [U] | ❌ 7O7Y_BQ_B5 |
O:112 [ARG] | 0:719 [C] | BQ:137 [VAL] | B5:1411 [C] | ❌ 7O7Y_BQ_B5 |
O:112 [ARG] | 0:720 [G] | BQ:137 [VAL] | B5:1412 [G] | ❌ 7O7Y_BQ_B5 |
O:22 [GLY] | 0:710 [G] | BQ:40 [ASN] | B5:1384 [C] | ❌ 7O7Y_BQ_B5 |
O:80 [ASP] | 0:659 [A] | BQ:104 [ARG] | B5:1297 [G] | ❌ 1VQ8_O_0 |
O:112 [ARG] | 0:710 [G] | BQ:137 [VAL] | B5:1384 [C] | ❌ 1VQ8_O_0 |
O:114 [ILE] | 0:708 [A] | BQ:139 [LEU] | B5:1382 [A] | ❌ 1VQ8_O_0 |
O:12 [ALA] | 0:1279 [U] | BQ:30 [LYS] | B5:2111 [A] | ❌ 1VQ8_O_0 |
O:19 [ARG] | 0:1279 [U] | BQ:37 [ARG] | B5:2111 [A] | ❌ 1VQ8_O_0 |
O:20 [SER] | 0:1277 [C] | BQ:38 [ARG] | B5:2027 [A] | ❌ 1VQ8_O_0 |
O:24 [ALA] | 0:708 [A] | BQ:42 [THR] | B5:1382 [A] | ❌ 1VQ8_O_0 |
O:32 [ARG] | 0:721 [A] | BQ:50 [ARG] | B5:1413 [C] | ❌ 1VQ8_O_0 |
O:32 [ARG] | 0:937 [C] | BQ:50 [ARG] | B5:1648 [U] | ❌ 1VQ8_O_0 |
O:32 [ARG] | 0:708 [A] | BQ:50 [ARG] | B5:1382 [A] | ❌ 1VQ8_O_0 |
O:34 [GLU] | 0:655 [U] | BQ:52 [PHE] | B5:1293 [G] | ❌ 1VQ8_O_0 |
O:37 [ARG] | 0:747 [G] | BQ:55 [ARG] | B5:1459 [G] | ❌ 1VQ8_O_0 |
O:39 [THR] | 0:654 [A] | BQ:57 [ASN] | B5:1292 [U] | ❌ 1VQ8_O_0 |
O:51 [TYR] | 0:720 [G] | BQ:69 [LYS] | B5:1412 [G] | ❌ 1VQ8_O_0 |
O:53 [GLN] | 0:700 [A] | BQ:71 [LYS] | B5:1374 [G] | ❌ 1VQ8_O_0 |
O:53 [GLN] | 0:701 [U] | BQ:71 [LYS] | B5:1375 [A] | ❌ 1VQ8_O_0 |
O:56 [GLU] | 0:711 [G] | BQ:78 [LYS] | B5:1385 [C] | ❌ 1VQ8_O_0 |
O:65 [LEU] | 0:745 [G] | BQ:87 [THR] | B5:1457 [G] | ❌ 1VQ8_O_0 |
O:66 [GLY] | 0:745 [G] | BQ:88 [ASP] | B5:1457 [G] | ❌ 1VQ8_O_0 |
O:68 [GLY] | 0:744 [G] | BQ:91 [ARG] | B5:1455 [A] | ❌ 1VQ8_O_0 |
O:19 [ARG] | 0:1278 [A] | BQ:37 [ARG] | B5:2110 [U] | ❌ 7O7Y_B5:2110 no longer at interface |
O:110 [HIS] | 0:712 [C] | BQ:135 [GLY] | B5:1386 [C] | ❌ 7O7Y_B5:1386 no longer at interface |
O:15 [LYS] | 0:1278 [A] | BQ:33 [ARG] | B5:2110 [U] | ❌ 7O7Y_B5:2110 no longer at interface |
O:84 [THR] | 0:661 [G] | BQ:108 [ARG] | B5:1299 [G] | ❌ 1VQ8_0:661 no longer at interface |
O:3 [THR] | 0:1280 [A] | BQ:21 [GLN] | B5:2112 [C] | ❌ 1VQ8_0:1280 no longer at interface |
O:8 [SER] | 0:1280 [A] | BQ:26 [ARG] | B5:2112 [C] | ❌ 1VQ8_O:8, 1VQ8_0:1280 no longer at interface |
O:12 [ALA] | 0:1280 [A] | BQ:30 [LYS] | B5:2112 [C] | ❌ 1VQ8_0:1280 no longer at interface |
O:15 [LYS] | 0:1280 [A] | BQ:33 [ARG] | B5:2112 [C] | ❌ 1VQ8_0:1280 no longer at interface |
O:19 [ARG] | 0:1275 [C] | BQ:37 [ARG] | B5:2025 [G] | ❌ 1VQ8_0:1275 no longer at interface |
O:31 [GLU] | 0:938 [G] | BQ:49 [LYS] | B5:1649 [C] | ❌ 1VQ8_O:31, 1VQ8_0:938 no longer at interface |
O:37 [ARG] | 0:748 [C] | BQ:55 [ARG] | B5:1460 [C] | ❌ 1VQ8_0:748 no longer at interface |
O:37 [ARG] | 0:749 [C] | BQ:55 [ARG] | B5:1461 [G] | ❌ 1VQ8_0:749 no longer at interface |
O:47 [ARG] | 0:723 [G] | BQ:65 [ARG] | B5:1415 [C] | ❌ 1VQ8_0:723 no longer at interface |
O:50 [ARG] | 0:702 [G] | BQ:68 [ARG] | B5:1376 [G] | ❌ 1VQ8_0:702 no longer at interface |
O:56 [GLU] | 0:718 [C] | BQ:78 [LYS] | B5:1410 [G] | ❌ 1VQ8_0:718 no longer at interface |
O:85 [ALA] | 0:660 [A] | BQ:109 [ALA] | B5:1298 [A] | ❌ 7O7Y_BQ:109 no longer at interface |
O:107 [GLU] | 0:710 [G] | BQ:132 [LYS] | B5:1384 [C] | ❌ 1VQ8_O:107 no longer at interface |
O:31 [GLU] | 0:937 [C] | BQ:49 [LYS] | B5:1648 [U] | ❌ 1VQ8_O:31 no longer at interface |
O:40 [HIS] | 0:656 [G] | BQ:58 [ARG] | B5:1294 [C] | ❌ 1VQ8_O:40 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Ribosomal proteins L15p and L18e | 0.94 | 2.29 | 0.16 | 0.89 | 0.94 | 0.98 | 0.93 | 0.71 | 0.65 | 0.27 | 0.29 |
Other pairs involving 1VQ8_O_0 or 7O7Y_BQ_B5
Total number of entries: 6
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
6AZ3_P_2 | 7O7Y_BQ_B5 | 0.75 | 0.91 | 1.08 | 0.47 | Ribosomal proteins L15p and L18e | Eukaryotic large subunit ribosomal RNA | compare |
1YHQ_O_0 | 7O7Y_BQ_B5 | 0.69 | 0.94 | 2.1 | 0.16 | Ribosomal proteins L15p and L18e | compare | |
6AZ3_P_1 | 7O7Y_BQ_B5 | 0.63 | 0.92 | 1.51 | 0.42 | Ribosomal proteins L15p and L18e | Eukaryotic large subunit ribosomal RNA | compare |
1VQ8_O_0 | 6AZ3_P_1 | 0.73 | 0.74 | 2.08 | 0.24 | Ribosomal proteins L15p and L18e | compare | |
1VQ8_O_0 | 1YHQ_O_0 | 0.99 | 1.0 | 0.32 | 0.93 | Ribosomal proteins L15p and L18e | Archaeal large subunit ribosomal RNA | compare |
1VQ8_O_0 | 7O7Y_BQ_B5 | 0.71 | 0.94 | 2.29 | 0.16 | Ribosomal proteins L15p and L18e | compare |