Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
6AZ3_P
|
6AZ3_2
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
---|---|---|---|---|---|---|
P:163 [GLY] | 2:1158 [U] | 4.51 | 2:1238 [A] | 0.0 | ||
P:164 [VAL] | 2:1158 [U] | 3.47 | 2:1238 [A] | 0.0 | ||
P:165 [PRO] | 2:1158 [U] | 3.05 | 2:1238 [A] | 0.0 | ||
P:165 [PRO] | 2:1159 [A] | 4.11 | 2:1154 [C] | 0.0 | ||
P:182 [ARG] | 2:1190 [A] | 3.08 | 2:1234 [U] | sugar:SC | 0.0 | |
P:182 [ARG] | 2:1191 [U] | 4.1 | 2:1233 [G] | 0.0 | ||
P:182 [ARG] | 2:1239 [G] | 4.13 | 2:1189 [G] | 0.0 | ||
P:185 [ARG] | 2:1227 [C] | 3.0 | 2:1199 [G] | 0.0 | ||
P:185 [ARG] | 2:1228 [C] | 2.98 | 2:1197 [G] | 0.0 | ||
P:186 [THR] | 2:1148 [C] | 3.36 | 0.0 | |||
P:186 [THR] | 2:1228 [C] | 4.75 | 2:1197 [G] | 0.0 | ||
P:186 [THR] | 2:1229 [A] | 2.77 | 2:1196 [U] | 0.0 | ||
P:187 [GLY] | 2:1191 [U] | 3.92 | 2:1233 [G] | 0.0 | ||
P:187 [GLY] | 2:1228 [C] | 4.69 | 2:1197 [G] | 0.0 | ||
P:187 [GLY] | 2:1229 [A] | 3.43 | 2:1196 [U] | 0.0 | ||
P:188 [ARG] | 2:1190 [A] | 4.86 | 2:1234 [U] | 0.0 | ||
P:188 [ARG] | 2:1191 [U] | 4.27 | 2:1233 [G] | 0.0 | ||
P:188 [ARG] | 2:1192 [C] | 3.94 | 0.0 | |||
P:188 [ARG] | 2:1226 [A] | 4.86 | 2:1212 [U] | 0.0 | ||
P:188 [ARG] | 2:1227 [C] | 2.58 | 2:1199 [G] | 0.0 | ||
P:188 [ARG] | 2:1228 [C] | 3.43 | 2:1197 [G] | 0.0 | ||
P:189 [SER] | 2:1159 [A] | 4.25 | 2:1154 [C] | 0.0 | ||
P:189 [SER] | 2:1160 [OMC] | 3.69 | 0.0 | |||
P:189 [SER] | 2:1190 [A] | 3.16 | 2:1234 [U] | sugar:SC | 0.0 | |
P:189 [SER] | 2:1191 [U] | 3.9 | 2:1233 [G] | 0.0 | ||
P:190 [TYR] | 2:1158 [U] | 4.54 | 2:1238 [A] | 0.0 | ||
P:190 [TYR] | 2:1159 [A] | 3.41 | 2:1154 [C] | 0.0 | ||
P:190 [TYR] | 2:1160 [OMC] | 3.99 | 0.0 | |||
P:191 [LYS] | 2:1148 [C] | 3.78 | base:SC | 0.0 | ||
P:193 [LYS] | 2:1151 [U] | 4.77 | 2:1163 [A] | 0.0 | ||
P:193 [LYS] | 2:1159 [A] | 3.76 | 2:1154 [C] | 0.0 | ||
P:195 [PHE] | 2:1150 [A] | 3.77 | 2:1164 [U] | 0.0 | ||
P:195 [PHE] | 2:1151 [U] | 3.9 | 2:1163 [A] | 0.0 | ||
P:196 [ARG] | 2:1151 [U] | 3.66 | 2:1163 [A] | 0.0 | ||
P:196 [ARG] | 2:1157 [G] | 3.19 | sugar:SC | 0.0 | ||
P:196 [ARG] | 2:1158 [U] | 3.76 | 2:1238 [A] | 0.0 | ||
P:197 [HIS] | 2:1150 [A] | 3.27 | 2:1164 [U] | 0.0 | ||
P:197 [HIS] | 2:1151 [U] | 2.79 | 2:1163 [A] | 0.0 |
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
---|---|---|---|---|---|---|---|
group71 | 6AZ3_P_2 | P: 60s ribosomal protein l18, putative, Leishmania donovani (natural) 2: rRNA beta, Leishmania donovani (natural) | A0A3S7XBN1 | Ribosomal proteins L15p and L18e | Eukaryotic large subunit ribosomal RNA | ✔ |
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Interologs
Total number of interologs for this interface: 1