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All interfaces > All interologs > Interface groups > group73 > 1VQ8_U_0

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1VQ8_U
1VQ8_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
U:16 [GLY] 0:2720 [C] 3.66 0:2718 [C] 80.51
U:17 [THR] 0:2720 [C] 3.92 0:2718 [C] 64.5
U:17 [THR] 0:2721 [U] 3.17 0:2761 [A] 64.5
U:18 [GLY] 0:2720 [C] 4.16 0:2718 [C] 98.85
U:18 [GLY] 0:2721 [U] 3.03 0:2761 [A] 98.85
U:19 [THR] 0:2721 [U] 3.83 0:2761 [A] 38.18
U:19 [THR] 0:2722 [G] 4.43 0:2760 [C] 38.18
U:32 [CYS] 0:2721 [U] 4.25 0:2761 [A] 76.18
U:34 [SER] 0:2722 [G] 4.1 0:2760 [C] 71.61
U:34 [SER] 0:2754 [G] 4.92 0:2728 [C] 71.61
U:34 [SER] 0:2755 [G] 2.66 0:2727 [A] 71.61
U:35 [LYS] 0:2754 [G] 3.95 0:2728 [C] 99.0
U:35 [LYS] 0:2755 [G] 3.18 0:2727 [A] 99.0
U:35 [LYS] 0:2864 [U] 3.07 0:2892 [G] 99.0
U:35 [LYS] 0:2865 [G] 2.8 0:2891 [A] base:SC 99.0
U:37 [GLU] 0:2722 [G] 3.35 0:2760 [C] 51.49
U:38 [ASN] 0:2754 [G] 3.62 0:2728 [C] 70.72
U:38 [ASN] 0:2755 [G] 2.81 0:2727 [A] 70.72
U:39 [ASN] 0:2754 [G] 4.85 0:2728 [C] 93.75
U:39 [ASN] 0:2865 [G] 4.93 0:2891 [A] 93.75
U:42 [LEU] 0:1810 [C] 3.45 65.59
U:42 [LEU] 0:2753 [G] 3.37 0:2729 [C] 65.59
U:42 [LEU] 0:2754 [G] 4.85 0:2728 [C] 65.59
U:44 [ARG] 0:1809 [G] 4.74 93.38
U:44 [ARG] 0:1810 [C] 2.66 93.38
U:44 [ARG] 0:2753 [G] 4.13 0:2729 [C] 93.38
U:44 [ARG] 0:2865 [G] 4.85 0:2891 [A] 93.38
U:50 [GLU] 0:2865 [G] 4.93 0:2891 [A] 64.59
U:50 [GLU] 0:2866 [U] 2.89 sugar:SC base/AA stacks 64.59
U:50 [GLU] 0:2887 [G] 4.85 0:2870 [C] 64.59
U:50 [GLU] 0:2890 [A] 4.18 64.59
U:51 [TRP] 0:2865 [G] 3.33 0:2891 [A] base/AA stacks 98.6
U:51 [TRP] 0:2866 [U] 2.99 98.6
U:56 [ARG] 0:2865 [G] 4.4 0:2891 [A] 86.46
U:56 [ARG] 0:2866 [U] 3.55 base:SC 86.46
U:56 [ARG] 0:2890 [A] 2.91 base/AA stacks 86.46

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group73 1VQ8_U_0 U: 50s ribosomal protein l24e, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P14116 LIM domain-like Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_U_0 6AZ3_X_5 0.88 0.75 1.17 0.25 LIM domain-like compare
1VQ8_U_0 1YHQ_U_0 0.99 1.0 0.2 0.92 LIM domain-like Archaeal large subunit ribosomal RNA compare
1VQ8_U_0 7O7Y_BW_B5 0.72 0.94 1.63 0.47 LIM domain-like compare