RNAprotDB

All interfaces > All interologs > Interface groups > group73 > 1VQ8_U_0 vs 1YHQ_U_0

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

1VQ8_U
1VQ8_0
1YHQ_U
1YHQ_0
Conserved?
U:51 [TRP] 0:2865 [G] U:51 [TRP] 0:2865 [G] ✔
U:51 [TRP] 0:2866 [U] U:51 [TRP] 0:2866 [U] ✔
U:18 [GLY] 0:2720 [C] U:18 [GLY] 0:2720 [C] ✔
U:18 [GLY] 0:2721 [U] U:18 [GLY] 0:2721 [U] ✔
U:50 [GLU] 0:2865 [G] U:50 [GLU] 0:2865 [G] ✔
U:50 [GLU] 0:2866 [U] U:50 [GLU] 0:2866 [U] ✔
U:50 [GLU] 0:2890 [A] U:50 [GLU] 0:2890 [A] ✔
U:32 [CYS] 0:2721 [U] U:32 [CYS] 0:2721 [U] ✔
U:37 [GLU] 0:2722 [G] U:37 [GLU] 0:2722 [G] ✔
U:34 [SER] 0:2722 [G] U:34 [SER] 0:2722 [G] ✔
U:34 [SER] 0:2754 [G] U:34 [SER] 0:2754 [G] ✔
U:34 [SER] 0:2755 [G] U:34 [SER] 0:2755 [G] ✔
U:19 [THR] 0:2721 [U] U:19 [THR] 0:2721 [U] ✔
U:19 [THR] 0:2722 [G] U:19 [THR] 0:2722 [G] ✔
U:56 [ARG] 0:2865 [G] U:56 [ARG] 0:2865 [G] ✔
U:56 [ARG] 0:2866 [U] U:56 [ARG] 0:2866 [U] ✔
U:56 [ARG] 0:2890 [A] U:56 [ARG] 0:2890 [A] ✔
U:44 [ARG] 0:1809 [G] U:44 [ARG] 0:1809 [G] ✔
U:44 [ARG] 0:1810 [C] U:44 [ARG] 0:1810 [C] ✔
U:44 [ARG] 0:2753 [G] U:44 [ARG] 0:2753 [G] ✔
U:44 [ARG] 0:2865 [G] U:44 [ARG] 0:2865 [G] ✔
U:16 [GLY] 0:2720 [C] U:16 [GLY] 0:2720 [C] ✔
U:42 [LEU] 0:1810 [C] U:42 [LEU] 0:1810 [C] ✔
U:42 [LEU] 0:2753 [G] U:42 [LEU] 0:2753 [G] ✔
U:42 [LEU] 0:2754 [G] U:42 [LEU] 0:2754 [G] ✔
U:39 [ASN] 0:2754 [G] U:39 [ASN] 0:2754 [G] ✔
U:39 [ASN] 0:2865 [G] U:39 [ASN] 0:2865 [G] ✔
U:17 [THR] 0:2720 [C] U:17 [THR] 0:2720 [C] ✔
U:17 [THR] 0:2721 [U] U:17 [THR] 0:2721 [U] ✔
U:35 [LYS] 0:2754 [G] U:35 [LYS] 0:2754 [G] ✔
U:35 [LYS] 0:2755 [G] U:35 [LYS] 0:2755 [G] ✔
U:35 [LYS] 0:2864 [U] U:35 [LYS] 0:2864 [U] ✔
U:35 [LYS] 0:2865 [G] U:35 [LYS] 0:2865 [G] ✔
U:38 [ASN] 0:2754 [G] U:38 [ASN] 0:2754 [G] ✔
U:38 [ASN] 0:2755 [G] U:38 [ASN] 0:2755 [G] ✔
U:50 [GLU] 0:2887 [G] U:50 [GLU] 0:2887 [G] ❌ 1YHQ_0:2887 no longer at interface
U:50 [GLU] 0:2889 [U] U:50 [GLU] 0:2889 [U] ❌ 1VQ8_0:2889 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
LIM domain-like Archaeal large subunit ribosomal RNA 1.0 0.2 0.92 1.0 1.0 1.0 0.92 0.99 1.00 0.90 1.00


Other pairs involving 1VQ8_U_0 or 1YHQ_U_0

Total number of entries: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_U_0 7O7Y_BW_B5 0.71 0.94 1.48 0.47 LIM domain-like compare
1VQ8_U_0 6AZ3_X_5 0.88 0.75 1.17 0.25 LIM domain-like compare
1VQ8_U_0 1YHQ_U_0 0.99 1.0 0.2 0.92 LIM domain-like Archaeal large subunit ribosomal RNA compare
1VQ8_U_0 7O7Y_BW_B5 0.72 0.94 1.63 0.47 LIM domain-like compare