RNAprotDB

Interface analysis

1VQ8_U	1VQ8_0	6AZ3_X	6AZ3_5	Conserved?
U:51 [TRP]	0:2865 [G]	X:55 [TRP]	5:40 [A]	✔
U:51 [TRP]	0:2866 [U]	X:55 [TRP]	5:41 [U]	✔
U:50 [GLU]	0:2865 [G]	X:54 [PRO]	5:40 [A]	✔
U:50 [GLU]	0:2866 [U]	X:54 [PRO]	5:41 [U]	✔
U:50 [GLU]	0:2890 [A]	X:54 [PRO]	5:97 [G]	✔
U:56 [ARG]	0:2890 [A]	X:60 [ARG]	5:97 [G]	✔
U:35 [LYS]	0:2864 [U]	X:39 [LYS]	5:39 [C]	✔
U:35 [LYS]	0:2865 [G]	X:39 [LYS]	5:40 [A]	✔
U:50 [GLU]	0:2887 [G]	X:54 [PRO]	5:94 [G]	❌ 6AZ3_X_5
U:56 [ARG]	0:2865 [G]	X:60 [ARG]	5:40 [A]	❌ 6AZ3_X_5
U:56 [ARG]	0:2866 [U]	X:60 [ARG]	5:41 [U]	❌ 6AZ3_X_5
U:51 [TRP]	0:2890 [A]	X:55 [TRP]	5:97 [G]	❌ 1VQ8_U_0
U:33 [SER]	0:2863 [G]	X:37 [ARG]	5:38 [G]	❌ 1VQ8_U:33, 1VQ8_0:2863 no longer at interface
U:44 [ARG]	0:2865 [G]	X:48 [LYS]	5:40 [A]	❌ 6AZ3_X:48 no longer at interface
U:39 [ASN]	0:2865 [G]	X:43 [LEU]	5:40 [A]	❌ 6AZ3_X:43 no longer at interface
U:55 [ALA]	0:2887 [G]	X:59 [TYR]	5:94 [G]	❌ 1VQ8_U:55 no longer at interface

Export the table of contacts

Common ECOD label(s)	Common RFAM label(s)	Interface TM-score	Interface RMSD	Percentage identity	Protein TM-score	RNA TM-score	Protein coverage	RNA coverage	Percentage conservation	Apolar conservation	H-bond conservation	Percentage switching out
LIM domain-like		0.75	1.17	0.25	0.83	0.67	0.57	0.62	0.88	0.78	0.33	0.50

Other pairs involving 1VQ8_U_0 or 6AZ3_X_5

Interface 1	Interface 2	Percentage conservation	Interface TM-score	Interface RMSD	Percentage identity	Common ECOD label(s)	Common RFAM label(s)	Explore both interfaces
1VQ8_U_0	6AZ3_X_5	0.88	0.75	1.17	0.25	LIM domain-like		compare
1VQ8_U_0	1YHQ_U_0	0.99	1.0	0.2	0.92	LIM domain-like	Archaeal large subunit ribosomal RNA	compare
1VQ8_U_0	7O7Y_BW_B5	0.72	0.94	1.63	0.47	LIM domain-like		compare
6AZ3_X_5	7O7Y_BW_B5	0.88	0.9	0.93	0.5	LIM domain-like		compare

Interface 1

Interface 2

Percentage conservation

Interface TM-score

Interface RMSD

Percentage identity

Common ECOD label(s)

Common RFAM label(s)

Explore both interfaces

0.88