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All interfaces > All interologs > Interface groups > group73 > 1VQ8_U_0 vs 7O7Y_BW_B5

Interface analysis


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Common contacts -

1VQ8_U
1VQ8_0
7O7Y_BW
7O7Y_B5
Conserved?
U:51 [TRP] 0:2865 [G] BW:51 [TRP] B5:4744 [G] ✔
U:51 [TRP] 0:2866 [U] BW:51 [TRP] B5:4745 [U] ✔
U:18 [GLY] 0:2720 [C] BW:18 [GLY] B5:4374 [PSU] ✔
U:18 [GLY] 0:2721 [U] BW:18 [GLY] B5:4375 [U] ✔
U:50 [GLU] 0:2865 [G] BW:50 [ASN] B5:4744 [G] ✔
U:50 [GLU] 0:2866 [U] BW:50 [ASN] B5:4745 [U] ✔
U:32 [CYS] 0:2721 [U] BW:32 [LEU] B5:4375 [U] ✔
U:37 [GLU] 0:2722 [G] BW:37 [GLU] B5:4376 [G] ✔
U:34 [SER] 0:2722 [G] BW:34 [ALA] B5:4376 [G] ✔
U:34 [SER] 0:2754 [G] BW:34 [ALA] B5:4408 [C] ✔
U:34 [SER] 0:2755 [G] BW:34 [ALA] B5:4409 [G] ✔
U:19 [THR] 0:2721 [U] BW:19 [ARG] B5:4375 [U] ✔
U:19 [THR] 0:2722 [G] BW:19 [ARG] B5:4376 [G] ✔
U:56 [ARG] 0:2890 [A] BW:56 [ARG] B5:4780 [G] ✔
U:44 [ARG] 0:1809 [G] BW:44 [ARG] B5:3347 [G] ✔
U:44 [ARG] 0:1810 [C] BW:44 [ARG] B5:3348 [U] ✔
U:16 [GLY] 0:2720 [C] BW:16 [GLY] B5:4374 [PSU] ✔
U:17 [THR] 0:2720 [C] BW:17 [HIS] B5:4374 [PSU] ✔
U:17 [THR] 0:2721 [U] BW:17 [HIS] B5:4375 [U] ✔
U:35 [LYS] 0:2754 [G] BW:35 [LYS] B5:4408 [C] ✔
U:35 [LYS] 0:2755 [G] BW:35 [LYS] B5:4409 [G] ✔
U:35 [LYS] 0:2864 [U] BW:35 [LYS] B5:4743 [C] ✔
U:35 [LYS] 0:2865 [G] BW:35 [LYS] B5:4744 [G] ✔
U:38 [ASN] 0:2754 [G] BW:38 [SER] B5:4408 [C] ✔
U:50 [GLU] 0:2887 [G] BW:50 [ASN] B5:4777 [A] ❌ 7O7Y_BW_B5
U:50 [GLU] 0:2890 [A] BW:50 [ASN] B5:4780 [G] ❌ 7O7Y_BW_B5
U:56 [ARG] 0:2865 [G] BW:56 [ARG] B5:4744 [G] ❌ 7O7Y_BW_B5
U:56 [ARG] 0:2866 [U] BW:56 [ARG] B5:4745 [U] ❌ 7O7Y_BW_B5
U:44 [ARG] 0:2753 [G] BW:44 [ARG] B5:4407 [G] ❌ 7O7Y_BW_B5
U:44 [ARG] 0:2865 [G] BW:44 [ARG] B5:4744 [G] ❌ 7O7Y_BW_B5
U:42 [LEU] 0:1810 [C] BW:42 [SER] B5:3348 [U] ❌ 7O7Y_BW_B5
U:42 [LEU] 0:2753 [G] BW:42 [SER] B5:4407 [G] ❌ 7O7Y_BW_B5
U:42 [LEU] 0:2754 [G] BW:42 [SER] B5:4408 [C] ❌ 7O7Y_BW_B5
U:39 [ASN] 0:2754 [G] BW:39 [ALA] B5:4408 [C] ❌ 7O7Y_BW_B5
U:39 [ASN] 0:2865 [G] BW:39 [ALA] B5:4744 [G] ❌ 7O7Y_BW_B5
U:38 [ASN] 0:2755 [G] BW:38 [SER] B5:4409 [G] ❌ 7O7Y_BW_B5
U:16 [GLY] 0:2721 [U] BW:16 [GLY] B5:4375 [U] ❌ 1VQ8_U_0
U:38 [ASN] 0:2753 [G] BW:38 [SER] B5:4407 [G] ❌ 1VQ8_U_0
U:39 [ASN] 0:1809 [G] BW:39 [ALA] B5:3347 [G] ❌ 1VQ8_U_0
U:51 [TRP] 0:1809 [G] BW:51 [TRP] B5:3347 [G] ❌ 1VQ8_U_0
U:51 [TRP] 0:2890 [A] BW:51 [TRP] B5:4780 [G] ❌ 1VQ8_U_0
U:19 [THR] 0:1742 [A] BW:19 [ARG] B5:2688 [A] ❌ 1VQ8_0:1742 no longer at interface
U:42 [LEU] 0:1811 [A] BW:42 [SER] B5:3349 [G] ❌ 1VQ8_0:1811 no longer at interface
U:44 [ARG] 0:1811 [A] BW:44 [ARG] B5:3349 [G] ❌ 1VQ8_0:1811 no longer at interface
U:55 [ALA] 0:2886 [C] BW:55 [TYR] B5:4776 [U] ❌ 1VQ8_U:55, 1VQ8_0:2886 no longer at interface
U:11 [THR] 0:2890 [A] BW:11 [TYR] B5:4780 [G] ❌ 1VQ8_U:11 no longer at interface
U:43 [GLY] 0:1810 [C] BW:43 [LYS] B5:3348 [U] ❌ 1VQ8_U:43 no longer at interface
U:45 [GLU] 0:1810 [C] BW:45 [ASN] B5:3348 [U] ❌ 1VQ8_U:45 no longer at interface
U:48 [ASN] 0:1809 [G] BW:48 [GLN] B5:3347 [G] ❌ 1VQ8_U:48 no longer at interface
U:48 [ASN] 0:1810 [C] BW:48 [GLN] B5:3348 [U] ❌ 1VQ8_U:48 no longer at interface
U:49 [LEU] 0:1809 [G] BW:49 [ILE] B5:3347 [G] ❌ 1VQ8_U:49 no longer at interface
U:55 [ALA] 0:2887 [G] BW:55 [TYR] B5:4777 [A] ❌ 1VQ8_U:55 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
LIM domain-like 0.94 1.63 0.47 0.87 0.94 1.0 1.0 0.72 0.51 0.31 0.39


Other pairs involving 1VQ8_U_0 or 7O7Y_BW_B5

Total number of entries: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_U_0 1YHQ_U_0 0.99 1.0 0.2 0.92 LIM domain-like Archaeal large subunit ribosomal RNA compare
1VQ8_U_0 6AZ3_X_5 0.88 0.75 1.17 0.25 LIM domain-like compare
1YHQ_U_0 7O7Y_BW_B5 0.71 0.94 1.48 0.47 LIM domain-like compare
6AZ3_X_4 7O7Y_BW_B5 0.87 0.87 1.03 0.5 LIM domain-like Eukaryotic large subunit ribosomal RNA compare
1VQ8_U_0 7O7Y_BW_B5 0.72 0.94 1.63 0.47 LIM domain-like compare
6AZ3_X_5 7O7Y_BW_B5 0.88 0.9 0.93 0.5 LIM domain-like compare