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All interfaces > All interologs > Interface groups > group73 > 1YHQ_U_0

Interface analysis

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1YHQ_U
1YHQ_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
U:16 [GLY] 0:2720 [C] 3.7 0:2718 [C] 80.51
U:17 [THR] 0:2720 [C] 3.91 0:2718 [C] 64.5
U:17 [THR] 0:2721 [U] 3.15 0:2761 [A] 64.5
U:18 [GLY] 0:2720 [C] 4.19 0:2718 [C] 98.85
U:18 [GLY] 0:2721 [U] 3.14 0:2761 [A] 98.85
U:19 [THR] 0:2721 [U] 3.78 0:2761 [A] 38.18
U:19 [THR] 0:2722 [G] 4.42 0:2760 [C] 38.18
U:32 [CYS] 0:2721 [U] 4.47 0:2761 [A] 76.18
U:34 [SER] 0:2722 [G] 4.15 0:2760 [C] 71.61
U:34 [SER] 0:2754 [G] 4.98 0:2728 [C] 71.61
U:34 [SER] 0:2755 [G] 2.65 0:2727 [A] 71.61
U:35 [LYS] 0:2754 [G] 4.03 0:2728 [C] 99.0
U:35 [LYS] 0:2755 [G] 3.24 0:2727 [A] 99.0
U:35 [LYS] 0:2864 [U] 2.96 0:2892 [G] 99.0
U:35 [LYS] 0:2865 [G] 2.9 0:2891 [A] base:SC, base:SC 99.0
U:37 [GLU] 0:2722 [G] 3.29 0:2760 [C] 51.49
U:38 [ASN] 0:2754 [G] 3.52 0:2728 [C] 70.72
U:38 [ASN] 0:2755 [G] 2.91 0:2727 [A] 70.72
U:39 [ASN] 0:2754 [G] 4.81 0:2728 [C] 93.75
U:39 [ASN] 0:2865 [G] 4.83 0:2891 [A] 93.75
U:42 [LEU] 0:1810 [C] 3.35 65.59
U:42 [LEU] 0:2753 [G] 3.31 0:2729 [C] 65.59
U:42 [LEU] 0:2754 [G] 4.86 0:2728 [C] 65.59
U:44 [ARG] 0:1809 [G] 4.58 93.38
U:44 [ARG] 0:1810 [C] 2.59 93.38
U:44 [ARG] 0:2753 [G] 4.19 0:2729 [C] 93.38
U:44 [ARG] 0:2865 [G] 4.61 0:2891 [A] 93.38
U:50 [GLU] 0:2865 [G] 4.82 0:2891 [A] 64.59
U:50 [GLU] 0:2866 [U] 2.87 sugar:SC base/AA stacks 64.59
U:50 [GLU] 0:2889 [U] 4.86 0:2868 [C] 64.59
U:50 [GLU] 0:2890 [A] 3.37 64.59
U:51 [TRP] 0:2865 [G] 3.31 0:2891 [A] base/AA stacks 98.6
U:51 [TRP] 0:2866 [U] 3.1 98.6
U:56 [ARG] 0:2865 [G] 4.77 0:2891 [A] 86.46
U:56 [ARG] 0:2866 [U] 3.75 base:SC 86.46
U:56 [ARG] 0:2890 [A] 2.83 base/AA stacks 86.46

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group73 1YHQ_U_0 U: 50s ribosomal protein l24e, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P14116 LIM domain-like Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_U_0 7O7Y_BW_B5 0.71 0.94 1.48 0.47 LIM domain-like compare
1VQ8_U_0 1YHQ_U_0 0.99 1.0 0.2 0.92 LIM domain-like Archaeal large subunit ribosomal RNA compare