Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6AZ3_X
|
6AZ3_4
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| X:16 [GLY] | 4:78 [C] | 2.84 | 79.5 | |||
| X:17 [HIS] | 4:78 [C] | 2.97 | 71.3 | |||
| X:17 [HIS] | 4:79 [U] | 2.82 | 4:119 [A] | 71.3 | ||
| X:18 [GLY] | 4:78 [C] | 4.84 | 94.2 | |||
| X:18 [GLY] | 4:79 [U] | 3.38 | 4:119 [A] | 94.2 | ||
| X:19 [ARG] | 4:79 [U] | 3.45 | 4:119 [A] | 15.4 | ||
| X:19 [ARG] | 4:80 [A] | 3.46 | 4:118 [C] | 15.4 | ||
| X:36 [SER] | 4:79 [U] | 4.73 | 4:119 [A] | 30.7 | ||
| X:38 [PRO] | 4:80 [A] | 3.59 | 4:118 [C] | 56.9 | ||
| X:38 [PRO] | 4:112 [C] | 4.78 | 4:87 [G] | 56.9 | ||
| X:38 [PRO] | 4:113 [G] | 3.64 | 4:85 [C] | 56.9 | ||
| X:39 [LYS] | 4:112 [C] | 3.36 | 4:87 [G] | 94.9 | ||
| X:39 [LYS] | 4:113 [G] | 4.3 | 4:85 [C] | 94.9 | ||
| X:42 [ALA] | 4:112 [C] | 4.21 | 4:87 [G] | 58.7 | ||
| X:46 [ARG] | 4:111 [C] | 3.58 | 4:88 [G] | sugar:SC | 45.7 | |
| X:46 [ARG] | 4:112 [C] | 4.69 | 4:87 [G] | 45.7 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group73 | 6AZ3_X_4 | X: Ribosomal protein el24, Leishmania donovani (natural) 4: rRNA delta, Leishmania donovani (natural) | LIM domain-like | Eukaryotic large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 1
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 6AZ3_X_4 | 7O7Y_BW_B5 | 0.87 | 0.87 | 1.03 | 0.5 | LIM domain-like | Eukaryotic large subunit ribosomal RNA | compare |