RNAprotDB

All interfaces > All interologs > Interface groups > group73 > 7O7Y_BW_B5

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

7O7Y_BW
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
BW:11 [TYR] B5:4780 [G] 3.83 B5:4745 [U] base:SC 13.67
BW:16 [GLY] B5:4374 [PSU] 3.13 87.71
BW:16 [GLY] B5:4375 [U] 4.84 B5:4415 [A] 87.71
BW:17 [HIS] B5:4374 [PSU] 4.16 70.73
BW:17 [HIS] B5:4375 [U] 4.14 B5:4415 [A] 70.73
BW:18 [GLY] B5:4374 [PSU] 4.31 97.17
BW:18 [GLY] B5:4375 [U] 3.26 B5:4415 [A] 97.17
BW:19 [ARG] B5:2688 [A] 4.9 B5:3575 [C] 19.83
BW:19 [ARG] B5:4375 [U] 3.17 B5:4415 [A] 19.83
BW:19 [ARG] B5:4376 [G] 3.31 B5:4414 [U] 19.83
BW:32 [LEU] B5:4375 [U] 4.47 B5:4415 [A] 30.78
BW:34 [ALA] B5:4376 [G] 3.62 B5:4414 [U] 61.13
BW:34 [ALA] B5:4408 [C] 4.66 B5:4383 [OMG] 61.13
BW:34 [ALA] B5:4409 [G] 3.31 B5:4381 [A] 61.13
BW:35 [LYS] B5:4408 [C] 3.83 B5:4383 [OMG] 97.42
BW:35 [LYS] B5:4409 [G] 3.58 B5:4381 [A] 97.42
BW:35 [LYS] B5:4743 [C] 3.28 B5:4782 [A] 97.42
BW:35 [LYS] B5:4744 [G] 2.76 B5:4781 [A] base:SC 97.42
BW:37 [GLU] B5:4376 [G] 4.03 B5:4414 [U] 10.74
BW:38 [SER] B5:4407 [G] 4.26 B5:4384 [U] 61.84
BW:38 [SER] B5:4408 [C] 2.96 B5:4383 [OMG] 61.84
BW:39 [ALA] B5:3347 [G] 3.96 55.24
BW:42 [SER] B5:3349 [G] 4.79 40.84
BW:43 [LYS] B5:3348 [U] 4.66 73.08
BW:44 [ARG] B5:3347 [G] 2.69 base:SC, sugar:SC, sugar:SC 54.19
BW:44 [ARG] B5:3348 [U] 3.95 54.19
BW:44 [ARG] B5:3349 [G] 2.65 54.19
BW:45 [ASN] B5:3348 [U] 4.89 82.53
BW:48 [GLN] B5:3347 [G] 3.52 55.85
BW:48 [GLN] B5:3348 [U] 4.69 55.85
BW:49 [ILE] B5:3347 [G] 3.47 55.36
BW:50 [ASN] B5:4744 [G] 3.95 B5:4781 [A] 39.91
BW:50 [ASN] B5:4745 [U] 3.48 B5:4780 [G] sugar:SC 39.91
BW:51 [TRP] B5:3347 [G] 4.28 88.59
BW:51 [TRP] B5:4744 [G] 3.3 B5:4781 [A] base/AA stacks 88.59
BW:51 [TRP] B5:4745 [U] 3.85 B5:4780 [G] 88.59
BW:51 [TRP] B5:4780 [G] 4.24 B5:4745 [U] 88.59
BW:55 [TYR] B5:4776 [U] 4.35 B5:4750 [A] 55.54
BW:55 [TYR] B5:4777 [A] 4.65 B5:4749 [PSU] 55.54
BW:56 [ARG] B5:4780 [G] 3.19 B5:4745 [U] base/AA stacks 97.97
BW:59 [HIS] B5:4776 [U] 3.99 B5:4750 [A] 62.18
BW:59 [HIS] B5:4777 [A] 3.58 B5:4749 [PSU] 62.18
BW:61 [LYS] B5:4777 [A] 2.73 B5:4749 [PSU] 96.07
BW:61 [LYS] B5:4778 [U] 3.31 B5:4748 [G] 96.07
BW:61 [LYS] B5:4779 [U] 4.49 B5:4747 [C] 96.07
BW:61 [LYS] B5:4780 [G] 2.92 B5:4745 [U] 96.07

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group73 7O7Y_BW_B5 BW: El24, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) G1SE28 LIM domain-like Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_X_5 7O7Y_BW_B5 0.88 0.9 0.93 0.5 LIM domain-like compare
6AZ3_X_4 7O7Y_BW_B5 0.87 0.87 1.03 0.5 LIM domain-like Eukaryotic large subunit ribosomal RNA compare
1YHQ_U_0 7O7Y_BW_B5 0.71 0.94 1.48 0.47 LIM domain-like compare
1VQ8_U_0 7O7Y_BW_B5 0.72 0.94 1.63 0.47 LIM domain-like compare