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All interfaces > All interologs > Interface groups > group74 > 2BH2_A_C

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Licorice
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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

2BH2_A
2BH2_C
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:23 [ASP] C:1952 [A] 3.99 74.12
A:23 [ASP] C:1954 [G] 2.99 base:SC 74.12
A:25 [ASP] C:1954 [G] 3.38 89.71
A:25 [ASP] C:1955 [U] 2.9 base:SC 89.71
A:26 [SER] C:1955 [U] 4.56 67.22
A:27 [PHE] C:1955 [U] 3.31 82.49
A:27 [PHE] C:1956 [U] 3.22 82.49
A:29 [GLN] C:1955 [U] 2.77 base:SC 90.97
A:31 [VAL] C:1954 [G] 3.66 86.98
A:33 [ARG] C:1952 [A] 3.24 85.94
A:33 [ARG] C:1953 [A] 3.04 85.94
A:33 [ARG] C:1954 [G] 3.51 base:SC 85.94
A:35 [ASN] C:1953 [A] 2.83 base:BB 49.54
A:36 [GLY] C:1953 [A] 3.27 93.28
A:37 [LYS] C:1953 [A] 3.54 94.77
A:38 [THR] C:1952 [A] 4.44 71.16
A:38 [THR] C:1953 [A] 3.08 sugar:BB 71.16
A:38 [THR] C:1954 [G] 3.05 71.16
A:40 [PHE] C:1954 [G] 3.25 93.17
A:40 [PHE] C:1955 [U] 3.23 base/AA stacks 93.17
A:58 [LYS] C:1946 [U] 3.05 C:1960 [A] 87.58
A:58 [LYS] C:1947 [C] 4.92 C:1959 [G] 87.58
A:59 [LYS] C:1948 [G] 3.35 C:1958 [C] 58.81
A:59 [LYS] C:1949 [G] 3.55 C:1957 [C] 58.81
A:59 [LYS] C:1953 [A] 3.07 base:BB 58.81
A:60 [GLN] C:1951 [U] 4.17 80.69
A:60 [GLN] C:1953 [A] 2.51 sugar:BB 80.69
A:60 [GLN] C:1954 [G] 3.3 80.69
A:61 [TYR] C:1953 [A] 4.65 79.35
A:61 [TYR] C:1954 [G] 3.79 79.35
A:61 [TYR] C:1955 [U] 3.34 79.35
A:63 [ARG] C:1955 [U] 2.88 sugar:SC 63.77
A:88 [GLY] C:1940 [U] 4.42 75.87
A:88 [GLY] C:1941 [C] 3.21 75.87
A:89 [GLY] C:1940 [U] 2.72 sugar:BB 78.32
A:89 [GLY] C:1941 [C] 3.6 78.32
A:90 [CYS] C:1940 [U] 4.9 82.56
A:91 [GLN] C:1940 [U] 4.21 80.02
A:110 [ARG] C:1951 [U] 2.73 sugar:SC 53.88
A:110 [ARG] C:1952 [A] 2.85 base/AA stacks 53.88
A:110 [ARG] C:1954 [G] 4.81 53.88
A:110 [ARG] C:1956 [U] 4.73 53.88
A:111 [LEU] C:1956 [U] 4.12 21.92
A:128 [ARG] C:1940 [U] 2.84 sugar:SC base/AA stacks 97.03
A:130 [ARG] C:1938 [A] 4.9 85.85
A:130 [ARG] C:1940 [U] 4.43 85.85
A:131 [ALA] C:1940 [U] 3.37 94.66
A:132 [ARG] C:1935 [G] 2.85 95.2
A:132 [ARG] C:1938 [A] 3.59 95.2
A:132 [ARG] C:1940 [U] 3.04 base:BB 95.2
A:132 [ARG] C:1941 [C] 3.07 base:BB base/AA stacks 95.2
A:132 [ARG] C:1942 [C] 2.34 base:SC, base:SC 95.2
A:135 [LEU] C:1932 [A] 4.45 85.14
A:135 [LEU] C:1933 [G] 2.55 base:BB 85.14
A:136 [ASN] C:1932 [A] 3.06 48.33
A:136 [ASN] C:1933 [G] 4.56 48.33
A:137 [TYR] C:1932 [A] 4.92 40.81
A:148 [PHE] C:1940 [U] 3.16 92.13
A:148 [PHE] C:1941 [C] 3.47 92.13
A:149 [ARG] C:1933 [G] 3.14 base:SC, base:SC 91.2
A:149 [ARG] C:1934 [C] 3.42 91.2
A:149 [ARG] C:1941 [C] 2.66 base:BB, sugar:BB 91.2
A:149 [ARG] C:1942 [C] 3.3 91.2
A:150 [LYS] C:1941 [C] 3.59 79.05
A:150 [LYS] C:1942 [C] 4.1 79.05
A:151 [ALA] C:1941 [C] 3.63 56.78
A:151 [ALA] C:1942 [C] 3.81 56.78
A:152 [GLY] C:1941 [C] 4.04 10.51
A:152 [GLY] C:1942 [C] 2.8 10.51
A:152 [GLY] C:1943 [U] 2.97 10.51
A:153 [SER] C:1942 [C] 3.7 86.53
A:153 [SER] C:1943 [U] 3.94 86.53
A:154 [SER] C:1943 [U] 3.85 44.56
A:189 [LEU] C:1933 [G] 3.0 base:BB 76.51
A:190 [GLY] C:1933 [G] 3.2 base:BB 75.57
A:190 [GLY] C:1934 [C] 3.25 75.57
A:191 [HIS] C:1934 [C] 2.74 sugar:SC 91.17
A:191 [HIS] C:1935 [G] 3.72 91.17
A:206 [ARG] C:1934 [C] 3.35 95.79
A:206 [ARG] C:1935 [G] 2.94 95.79
A:208 [THR] C:1933 [G] 3.52 sugar:SC 66.24
A:208 [THR] C:1934 [C] 4.51 66.24
A:236 [SER] C:1935 [G] 4.51 71.38
A:261 [ARG] C:1935 [G] 3.64 55.7
A:261 [ARG] C:1936 [A] 4.6 55.7
A:266 [VAL] C:1940 [U] 3.79 92.66
A:315 [GLU] C:1937 [A] 4.91 95.65
A:316 [GLY] C:1937 [A] 3.64 base:BB 73.9
A:317 [VAL] C:1937 [A] 4.02 61.74
A:341 [GLU] C:1937 [A] 4.63 76.21
A:342 [ASN] C:1937 [A] 3.22 85.6
A:344 [GLU] C:1937 [A] 4.34 60.8
A:365 [ALA] C:1937 [A] 3.26 90.53
A:365 [ALA] C:1938 [A] 3.56 90.53
A:366 [ARG] C:1938 [A] 3.17 97.59
A:366 [ARG] C:1940 [U] 3.65 97.59
A:366 [ARG] C:1941 [C] 3.24 97.59
A:366 [ARG] C:1942 [C] 4.46 97.59
A:366 [ARG] C:1957 [C] 4.86 C:1949 [G] 97.59
A:367 [ALA] C:1958 [C] 4.84 C:1948 [G] 87.61
A:390 [ASN] C:1956 [U] 4.51 90.69
A:390 [ASN] C:1957 [C] 3.43 C:1949 [G] 90.69
A:391 [PRO] C:1956 [U] 4.57 90.64
A:392 [ALA] C:1956 [U] 3.02 85.47
A:392 [ALA] C:1957 [C] 3.44 C:1949 [G] 85.47
A:393 [THR] C:1957 [C] 4.42 C:1949 [G] 93.06
A:396 [ARG] C:1957 [C] 3.42 C:1949 [G] 98.86
A:396 [ARG] C:1958 [C] 3.46 C:1948 [G] 98.86
A:417 [PHE] C:1940 [U] 3.59 97.25
A:420 [THR] C:1940 [U] 3.83 99.0
A:422 [HIS] C:1940 [U] 3.17 98.92
A:422 [HIS] C:1941 [C] 2.77 98.92
A:500 [SAH] C:1937 [A] 3.22 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group74 2BH2_A_C A: 23s rRNA (uracil-5-)-methyltransferase ruma, Escherichia coli (genetically engineered) C: 23s ribosomal RNA 1932-1968, Escherichia coli (synthetic) P55135 Nucleic acid-binding proteins & S-adenosyl-L-methionine-dependent methyltransferases ✘

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2BH2_A_C 5ZQ8_B_C 0.80 0.88 1.15 0.0 S-adenosyl-L-methionine-dependent methyltransferases compare
2BH2_A_C 3WBM_A_X 0.28 0.59 2.98 0.0 compare
2BH2_A_C 3BT7_A_C 0.69 0.8 2.43 0.16 S-adenosyl-L-methionine-dependent methyltransferases compare