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All interfaces > All interologs > Interface groups > group74 > 3WBM_A_X

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

3WBM_A
3WBM_X
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:13 [LEU] X:11 [C] 3.97 37.19
A:13 [LEU] X:12 [C] 3.97 Y:15 [A] 37.19
A:14 [ILE] X:12 [C] 3.78 Y:15 [A] 82.38
A:14 [ILE] X:13 [C] 3.98 Y:14 [G] 82.38
A:15 [GLY] X:12 [C] 3.45 Y:15 [A] 92.25
A:15 [GLY] X:13 [C] 3.78 Y:14 [G] 92.25
A:16 [LYS] X:12 [C] 4.43 Y:15 [A] 61.73
A:16 [LYS] X:13 [C] 2.91 Y:14 [G] 61.73
A:16 [LYS] X:14 [G] 2.93 Y:13 [C] 61.73
A:17 [LYS] X:10 [A] 4.75 Y:17 [U] 87.92
A:17 [LYS] X:11 [C] 2.51 87.92
A:17 [LYS] X:12 [C] 3.37 Y:15 [A] 87.92
A:22 [TYR] X:12 [C] 2.67 Y:15 [A] 94.23
A:42 [ARG] X:12 [C] 3.78 Y:15 [A] sugar:SC 92.38
A:42 [ARG] X:13 [C] 3.17 Y:14 [G] 92.38
A:42 [ARG] X:14 [G] 4.82 Y:13 [C] 92.38
A:43 [GLY] X:13 [C] 3.95 Y:14 [G] 99.0
A:43 [GLY] X:14 [G] 3.4 Y:13 [C] 99.0
A:44 [ARG] X:13 [C] 4.67 Y:14 [G] 60.25
A:44 [ARG] X:14 [G] 3.09 Y:13 [C] 60.25
A:44 [ARG] X:15 [A] 2.74 Y:12 [C] 60.25
A:45 [ALA] X:13 [C] 3.12 Y:14 [G] 70.96
A:87 [VAL] X:13 [C] 3.34 Y:14 [G] 85.09
A:87 [VAL] X:14 [G] 4.61 Y:13 [C] 85.09

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group74 3WBM_A_X A: Dna/RNA-binding protein alba 1, Sulfolobus shibatae (genetically engineered) X: RNA (25-mer), Synthetic construct (synthetic) P60848 AlbA-like ✘

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2BH2_A_C 3WBM_A_X 0.28 0.59 2.98 0.0 compare
3WBM_A_X 7C79_G_A 0.45 0.62 1.27 0.27 AlbA-like compare