Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7C79_G
|
7C79_A
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| G:13 [LYS] | A:40 [A] | 4.69 | 81.0 | |||
| G:15 [VAL] | A:40 [A] | 3.56 | 68.92 | |||
| G:17 [LYS] | A:38 [C] | 3.73 | 83.61 | |||
| G:17 [LYS] | A:39 [A] | 3.68 | 83.61 | |||
| G:17 [LYS] | A:40 [A] | 3.09 | 83.61 | |||
| G:18 [HIS] | A:38 [C] | 2.62 | base:BB | 75.18 | ||
| G:19 [PRO] | A:36 [U] | 3.6 | 77.56 | |||
| G:19 [PRO] | A:37 [A] | 3.17 | 77.56 | |||
| G:19 [PRO] | A:38 [C] | 4.04 | 77.56 | |||
| G:20 [SER] | A:37 [A] | 2.62 | base:SC | 78.77 | ||
| G:22 [LYS] | A:36 [U] | 2.91 | 72.07 | |||
| G:22 [LYS] | A:37 [A] | 3.31 | 72.07 | |||
| G:25 [THR] | A:236 [A] | 3.52 | A:253 [U] | 68.34 | ||
| G:25 [THR] | A:237 [U] | 4.47 | A:252 [A] | 68.34 | ||
| G:26 [HIS] | A:234 [G] | 4.68 | A:255 [U] | 48.74 | ||
| G:26 [HIS] | A:235 [G] | 3.2 | A:254 [C] | 48.74 | ||
| G:26 [HIS] | A:236 [A] | 3.8 | A:253 [U] | 48.74 | ||
| G:27 [LYS] | A:235 [G] | 4.93 | A:254 [C] | 60.95 | ||
| G:32 [THR] | A:35 [U] | 3.93 | 73.82 | |||
| G:33 [ILE] | A:35 [U] | 3.93 | 70.71 | |||
| G:34 [PHE] | A:35 [U] | 3.41 | base:BB, sugar:BB | 74.72 | ||
| G:34 [PHE] | A:37 [A] | 3.14 | 74.72 | |||
| G:35 [VAL] | A:37 [A] | 2.18 | sugar:BB | 81.3 | ||
| G:36 [LYS] | A:35 [U] | 3.27 | 90.69 | |||
| G:36 [LYS] | A:36 [U] | 3.03 | 90.69 | |||
| G:36 [LYS] | A:37 [A] | 3.52 | 90.69 | |||
| G:36 [LYS] | A:38 [C] | 3.95 | 90.69 | |||
| G:37 [SER] | A:37 [A] | 4.23 | 81.72 | |||
| G:37 [SER] | A:38 [C] | 3.65 | 81.72 | |||
| G:37 [SER] | A:39 [A] | 3.6 | 81.72 | |||
| G:37 [SER] | A:69 [A] | 4.96 | 81.72 | |||
| G:38 [THR] | A:35 [U] | 4.67 | 59.9 | |||
| G:38 [THR] | A:70 [U] | 4.97 | 59.9 | |||
| G:39 [THR] | A:35 [U] | 3.15 | 93.08 | |||
| G:39 [THR] | A:70 [U] | 4.43 | 93.08 | |||
| G:40 [PRO] | A:34 [C] | 4.36 | A:73 [G] | 91.08 | ||
| G:40 [PRO] | A:35 [U] | 3.25 | 91.08 | |||
| G:40 [PRO] | A:70 [U] | 3.79 | 91.08 | |||
| G:40 [PRO] | A:73 [G] | 3.95 | A:34 [C] | 91.08 | ||
| G:41 [TYR] | A:25 [A] | 4.15 | 74.36 | |||
| G:41 [TYR] | A:70 [U] | 4.69 | 74.36 | |||
| G:41 [TYR] | A:71 [A] | 3.33 | base/AA stacks | 74.36 | ||
| G:42 [VAL] | A:71 [A] | 4.03 | 77.94 | |||
| G:42 [VAL] | A:72 [U] | 3.24 | 77.94 | |||
| G:42 [VAL] | A:73 [G] | 3.28 | A:34 [C] | 77.94 | ||
| G:43 [SER] | A:34 [C] | 3.56 | A:73 [G] | 98.17 | ||
| G:43 [SER] | A:35 [U] | 3.75 | 98.17 | |||
| G:43 [SER] | A:73 [G] | 3.98 | A:34 [C] | 98.17 | ||
| G:45 [LEU] | A:25 [A] | 4.68 | 62.24 | |||
| G:45 [LEU] | A:72 [U] | 3.54 | 62.24 | |||
| G:46 [LYS] | A:26 [A] | 3.35 | 97.56 | |||
| G:46 [LYS] | A:33 [G] | 4.14 | A:74 [C] | 97.56 | ||
| G:46 [LYS] | A:34 [C] | 3.53 | A:73 [G] | 97.56 | ||
| G:46 [LYS] | A:72 [U] | 3.29 | 97.56 | |||
| G:46 [LYS] | A:73 [G] | 2.76 | A:34 [C] | base:SC, base:SC | 97.56 | |
| G:46 [LYS] | A:74 [C] | 3.57 | A:33 [G] | 97.56 | ||
| G:47 [ARG] | A:34 [C] | 2.76 | A:73 [G] | 92.2 | ||
| G:47 [ARG] | A:35 [U] | 3.37 | base/AA stacks | 92.2 | ||
| G:49 [ASN] | A:72 [U] | 3.27 | base:SC | 53.73 | ||
| G:50 [LYS] | A:33 [G] | 4.12 | A:74 [C] | 89.52 | ||
| G:51 [PHE] | A:35 [U] | 3.92 | 41.86 | |||
| G:57 [LYS] | A:257 [A] | 4.62 | 57.29 | |||
| G:66 [LEU] | A:37 [A] | 3.62 | 67.44 | |||
| G:67 [GLY] | A:37 [A] | 3.6 | 88.27 | |||
| G:68 [MET] | A:37 [A] | 3.47 | sugar:BB | 90.0 | ||
| G:68 [MET] | A:38 [C] | 3.29 | 90.0 | |||
| G:69 [GLY] | A:38 [C] | 4.11 | 96.93 | |||
| G:70 [LYS] | A:38 [C] | 4.14 | 79.71 | |||
| G:70 [LYS] | A:39 [A] | 3.47 | 79.71 | |||
| G:70 [LYS] | A:68 [A] | 4.01 | 79.71 | |||
| G:71 [ALA] | A:37 [A] | 4.31 | 88.27 | |||
| G:77 [ALA] | A:71 [A] | 4.52 | 71.31 | |||
| G:81 [HIS] | A:25 [A] | 4.35 | 58.96 | |||
| G:86 [LYS] | A:25 [A] | 4.43 | 39.31 | |||
| G:86 [LYS] | A:26 [A] | 4.7 | 39.31 | |||
| G:86 [LYS] | A:72 [U] | 4.33 | 39.31 | |||
| G:95 [LYS] | A:42 [A] | 4.86 | 60.05 | |||
| G:96 [THR] | A:42 [A] | 3.61 | base:SC | 89.54 | ||
| G:97 [ILE] | A:37 [A] | 3.34 | 78.65 | |||
| G:99 [VAL] | A:38 [C] | 4.34 | 86.39 | |||
| G:101 [ASP] | A:40 [A] | 4.51 | 99.0 | |||
| G:129 [ARG] | A:38 [C] | 2.78 | base:SC, base:SC, base:SC | 98.93 | ||
| G:129 [ARG] | A:40 [A] | 3.9 | 98.93 | |||
| G:129 [ARG] | A:42 [A] | 3.67 | 98.93 | |||
| G:129 [ARG] | A:43 [U] | 4.8 | 98.93 | |||
| G:130 [ALA] | A:42 [A] | 2.87 | sugar:BB | 50.13 | ||
| G:131 [VAL] | A:38 [C] | 4.89 | 74.4 | |||
| G:131 [VAL] | A:42 [A] | 3.35 | 74.4 | |||
| G:132 [SER] | A:42 [A] | 3.0 | base:BB, base:SC, base:SC | 93.05 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group74 | 7C79_G_A | G: Ribonucleases p/mrp protein subunit pop7, Saccharomyces cerevisiae (strain atcc 204508 / s288c) (natural) A: Ribonuclease mrp RNA subunit nme1, Saccharomyces cerevisiae s288c (natural) | P38291 | AlbA-like | RNase MRP | ✘ |
|
Interologs
Total number of interologs for this interface: 1
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 3WBM_A_X | 7C79_G_A | 0.45 | 0.62 | 1.27 | 0.27 | AlbA-like | compare |