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All interfaces > All interologs > Interface groups > group75 > 4Y4O_1t_1a

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_1t
4Y4O_1a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1t:10 [LEU] 1a:60 [A] 4.29 1a:110 [C] 72.46
1t:10 [LEU] 1a:61 [G] 3.13 1a:106 [C] 72.46
1t:10 [LEU] 1a:331 [G] 4.99 1a:111 [G] 72.46
1t:10 [LEU] 1a:332 [G] 3.1 1a:321 [A] 72.46
1t:11 [SER] 1a:61 [G] 3.18 1a:106 [C] base:SC 90.48
1t:11 [SER] 1a:62 [U] 4.94 1a:105 [G] 90.48
1t:11 [SER] 1a:107 [G] 4.36 90.48
1t:12 [ALA] 1a:108 [G] 4.21 89.85
1t:12 [ALA] 1a:332 [G] 4.12 1a:321 [A] 89.85
1t:14 [LYS] 1a:103 [C] 3.06 1a:66 [G] 94.29
1t:14 [LYS] 1a:104 [G] 3.22 1a:63 [C] 94.29
1t:15 [ARG] 1a:106 [C] 3.76 1a:61 [G] 73.62
1t:15 [ARG] 1a:107 [G] 2.92 base:SC, base:SC 73.62
1t:15 [ARG] 1a:108 [G] 3.4 base/AA stacks 73.62
1t:16 [HIS] 1a:332 [G] 4.26 1a:321 [A] 35.35
1t:16 [HIS] 1a:333 [G] 3.07 1a:320 [C] sugar:SC 35.35
1t:17 [ARG] 1a:102 [G] 3.39 1a:67 [C] 89.72
1t:17 [ARG] 1a:103 [C] 3.01 1a:66 [G] 89.72
1t:18 [GLN] 1a:104 [G] 3.4 1a:63 [C] 73.24
1t:18 [GLN] 1a:105 [G] 4.51 1a:62 [U] 73.24
1t:19 [SER] 1a:322 [C] 4.04 1a:329 [A] 81.51
1t:19 [SER] 1a:323 [U] 3.48 1a:327 [A] 81.51
1t:21 [LYS] 1a:103 [C] 3.76 1a:66 [G] 77.46
1t:21 [LYS] 1a:104 [G] 3.48 1a:63 [C] 77.46
1t:21 [LYS] 1a:150 [C] 4.36 1a:171 [A] 77.46
1t:22 [ARG] 1a:105 [G] 3.8 1a:62 [U] 74.17
1t:22 [ARG] 1a:323 [U] 3.31 1a:327 [A] 74.17
1t:22 [ARG] 1a:324 [G] 2.65 1a:109 [A] 74.17
1t:23 [ARG] 1a:322 [C] 3.45 1a:329 [A] 74.19
1t:23 [ARG] 1a:323 [U] 3.73 1a:327 [A] 74.19
1t:23 [ARG] 1a:1436 [U] 3.6 1a:1465 [C] 74.19
1t:24 [LEU] 1a:1459 [C] 4.82 1a:1443 [G] 0.0
1t:25 [ARG] 1a:174 [C] 4.53 1a:148 [G] 63.32
1t:25 [ARG] 1a:175 [C] 3.99 1a:147 [G] 63.32
1t:26 [ASN] 1a:323 [U] 2.86 1a:327 [A] 99.0
1t:26 [ASN] 1a:324 [G] 2.76 1a:109 [A] 99.0
1t:27 [LYS] 1a:1458 [G] 4.96 1a:1444 [C] 65.41
1t:27 [LYS] 1a:1459 [C] 3.97 1a:1443 [G] 65.41
1t:28 [ALA] 1a:1458 [G] 3.72 1a:1444 [C] 28.65
1t:28 [ALA] 1a:1459 [C] 4.02 1a:1443 [G] 28.65
1t:29 [LYS] 1a:175 [C] 4.7 1a:147 [G] 7.79
1t:29 [LYS] 1a:176 [C] 3.34 1a:146 [G] 7.79
1t:30 [LYS] 1a:323 [U] 4.59 1a:327 [A] 76.4
1t:31 [SER] 1a:1458 [G] 3.14 1a:1444 [C] 83.27
1t:31 [SER] 1a:1459 [C] 3.05 1a:1443 [G] 83.27
1t:32 [ALA] 1a:1457 [G] 3.86 1a:1445 [C] 33.17
1t:32 [ALA] 1a:1458 [G] 3.63 1a:1444 [C] 33.17
1t:34 [LYS] 1a:1437 [C] 4.79 1a:1464 [G] 84.44
1t:34 [LYS] 1a:1438 [G] 3.32 1a:1463 [C] 84.44
1t:35 [THR] 1a:1457 [G] 3.47 1a:1445 [C] 77.73
1t:35 [THR] 1a:1458 [G] 2.22 1a:1444 [C] 77.73
1t:36 [LEU] 1a:1456 [G] 3.51 27.16
1t:36 [LEU] 1a:1457 [G] 3.89 1a:1445 [C] 27.16
1t:38 [LYS] 1a:1439 [C] 3.35 1a:1462 [G] 83.9
1t:38 [LYS] 1a:1440 [C] 3.74 1a:1461 [G] 83.9
1t:39 [LYS] 1a:1456 [G] 2.72 46.55
1t:39 [LYS] 1a:1457 [G] 2.77 1a:1445 [C] 46.55
1t:43 [LEU] 1a:1456 [G] 3.46 65.98
1t:51 [GLU] 1a:1456 [G] 2.5 base:SC, base:SC 30.14
1t:54 [LYS] 1a:1456 [G] 2.11 base:SC 45.85
1t:55 [ILE] 1a:1456 [G] 3.87 4.63
1t:57 [ARG] 1a:192 [U] 3.58 1a:185 [A] 43.91
1t:57 [ARG] 1a:193 [C] 3.91 1a:184 [G] 43.91
1t:58 [LYS] 1a:1452 [C] 4.81 24.18
1t:60 [GLU] 1a:185 [A] 3.92 1a:192 [U] 14.27
1t:60 [GLU] 1a:186 [C] 4.74 1a:191 [G] 14.27
1t:60 [GLU] 1a:192 [U] 2.89 1a:185 [A] base:SC, sugar:SC 14.27
1t:60 [GLU] 1a:193 [C] 2.89 1a:184 [G] 14.27
1t:61 [SER] 1a:193 [C] 3.3 1a:184 [G] 84.44
1t:61 [SER] 1a:194 [C] 3.09 1a:183 [G] 84.44
1t:64 [ASP] 1a:185 [A] 4.29 1a:192 [U] 92.28
1t:64 [ASP] 1a:193 [C] 3.05 1a:184 [G] sugar:SC 92.28
1t:64 [ASP] 1a:194 [C] 3.56 1a:183 [G] 92.28
1t:65 [LYS] 1a:177 [C] 2.81 1a:145 [G] 74.82
1t:65 [LYS] 1a:178 [C] 3.35 1a:144 [G] 74.82
1t:65 [LYS] 1a:194 [C] 4.35 1a:183 [G] 74.82
1t:65 [LYS] 1a:195 [A] 3.58 1a:180 [U] 74.82
1t:68 [LYS] 1a:177 [C] 4.24 1a:145 [G] 66.87
1t:68 [LYS] 1a:194 [C] 3.56 1a:183 [G] 66.87
1t:68 [LYS] 1a:195 [A] 3.35 1a:180 [U] 66.87
1t:68 [LYS] 1a:196 [A] 2.52 1a:179 [A] 66.87
1t:68 [LYS] 1a:223 [U] 4.73 1a:140 [A] 66.87
1t:70 [SER] 1a:324 [G] 3.12 1a:109 [A] 68.63
1t:70 [SER] 1a:325 [A] 3.35 68.63
1t:73 [HIS] 1a:132 [C] 3.31 1a:230 [G] 94.32
1t:73 [HIS] 1a:133 [U] 3.6 1a:229 [U] 94.32
1t:73 [HIS] 1a:262 [A] 3.49 94.32
1t:74 [LYS] 1a:184 [G] 3.76 1a:193 [C] 69.23
1t:74 [LYS] 1a:185 [A] 4.9 1a:192 [U] 69.23
1t:74 [LYS] 1a:224 [C] 2.7 1a:139 [G] 69.23
1t:74 [LYS] 1a:225 [C] 4.91 1a:138 [G] 69.23
1t:75 [ASN] 1a:131 [C] 4.78 1a:231 [G] 91.11
1t:75 [ASN] 1a:132 [C] 3.44 1a:230 [G] 91.11
1t:75 [ASN] 1a:262 [A] 3.56 91.11
1t:75 [ASN] 1a:263 [A] 3.92 91.11
1t:76 [ALA] 1a:262 [A] 3.7 70.36
1t:76 [ALA] 1a:263 [A] 4.72 70.36
1t:77 [ALA] 1a:185 [A] 4.87 1a:192 [U] 94.14
1t:78 [ALA] 1a:185 [A] 3.37 1a:192 [U] 80.93
1t:78 [ALA] 1a:186 [C] 3.45 1a:191 [G] 80.93
1t:79 [ARG] 1a:260 [G] 4.87 1a:265 [G] 97.67
1t:79 [ARG] 1a:261 [U] 2.63 base/AA stacks 97.67
1t:79 [ARG] 1a:262 [A] 4.03 97.67
1t:79 [ARG] 1a:263 [A] 2.61 97.67
1t:80 [ARG] 1a:260 [G] 3.77 1a:265 [G] 61.94
1t:81 [LYS] 1a:185 [A] 2.94 1a:192 [U] base:SC 89.48
1t:81 [LYS] 1a:186 [C] 3.33 1a:191 [G] 89.48
1t:81 [LYS] 1a:193 [C] 4.72 1a:184 [G] 89.48
1t:82 [SER] 1a:186 [C] 3.31 1a:191 [G] 92.44
1t:82 [SER] 1a:187 [C] 3.24 1a:190 [U] 92.44
1t:83 [ARG] 1a:259 [G] 3.71 1a:267 [C] 86.5
1t:83 [ARG] 1a:260 [G] 3.29 1a:265 [G] base:SC 86.5
1t:83 [ARG] 1a:261 [U] 3.44 base:SC 86.5
1t:85 [MET] 1a:186 [C] 3.42 1a:191 [G] 65.26
1t:85 [MET] 1a:187 [C] 3.32 1a:190 [U] 65.26
1t:85 [MET] 1a:191 [G] 3.89 1a:186 [C] 65.26
1t:85 [MET] 1a:192 [U] 4.2 1a:185 [A] 65.26
1t:86 [ARG] 1a:187 [C] 3.69 1a:190 [U] 64.46
1t:86 [ARG] 1a:188 [C] 4.57 1a:189 [G] 64.46
1t:86 [ARG] 1a:258 [G] 4.7 1a:268 [C] 64.46
1t:89 [ARG] 1a:187 [C] 2.85 1a:190 [U] base:SC, sugar:SC 65.09
1t:89 [ARG] 1a:188 [C] 3.09 1a:189 [G] 65.09
1t:101 [GLY] 1a:191 [G] 3.02 1a:186 [C] 55.5
1t:101 [GLY] 1a:192 [U] 4.02 1a:185 [A] 55.5
1t:102 [GLY] 1a:187 [C] 4.38 1a:190 [U] 30.8
1t:102 [GLY] 1a:191 [G] 3.22 1a:186 [C] 30.8
1t:102 [GLY] 1a:192 [U] 3.57 1a:185 [A] 30.8
1t:103 [GLY] 1a:187 [C] 3.26 1a:190 [U] base:BB 64.18
1t:103 [GLY] 1a:188 [C] 3.7 1a:189 [G] 64.18
1t:103 [GLY] 1a:189L [G] 4.58 64.18
1t:103 [GLY] 1a:190 [U] 3.1 1a:187 [C] base:BB 64.18
1t:103 [GLY] 1a:191 [G] 3.36 1a:186 [C] 64.18

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group75 4Y4O_1t_1a 1t: 30s ribosomal protein s20, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1a: 16s ribosomal RNA, Thermus thermophilus hb8 (natural) P80380 Ribosomal protein S20 Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2VQE_T_A 4Y4O_1t_1a 0.85 0.99 1.0 0.87 Ribosomal protein S20 Bacterial small subunit ribosomal RNA compare
4Y4O_1t_1a 6S0X_t_a 0.51 0.94 3.25 0.34 Ribosomal protein S20 Bacterial small subunit ribosomal RNA compare
4Y4O_1t_1a 7K00_T_A 0.70 0.97 1.35 0.39 Ribosomal protein S20 Bacterial small subunit ribosomal RNA compare
4Y4O_1t_1a 7RYG_t_a 0.41 0.91 2.68 0.25 Ribosomal protein S20 Bacterial small subunit ribosomal RNA compare