RNAprotDB

All interfaces > All interologs > Interface groups > group75 > 4Y4O_1t_1a vs 6S0X_t_a

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

4Y4O_1t
4Y4O_1a
6S0X_t
6S0X_a
Conserved?
1t:11 [SER] 1a:61 [G] t:6 [SER] a:62 [G] ✔
1t:11 [SER] 1a:107 [G] t:6 [SER] a:106 [G] ✔
1t:73 [HIS] 1a:132 [C] t:67 [HIS] a:132 [C] ✔
1t:73 [HIS] 1a:133 [U] t:67 [HIS] a:133 [U] ✔
1t:73 [HIS] 1a:262 [A] t:67 [HIS] a:270 [A] ✔
1t:19 [SER] 1a:322 [C] t:14 [THR] a:330 [C] ✔
1t:19 [SER] 1a:323 [U] t:14 [THR] a:331 [U] ✔
1t:12 [ALA] 1a:332 [G] t:7 [ALA] a:340 [G] ✔
1t:60 [GLU] 1a:192 [U] t:54 [VAL] a:206 [A] ✔
1t:60 [GLU] 1a:193 [C] t:54 [VAL] a:207 [G] ✔
1t:22 [ARG] 1a:323 [U] t:17 [ALA] a:331 [U] ✔
1t:16 [HIS] 1a:332 [G] t:11 [VAL] a:340 [G] ✔
1t:16 [HIS] 1a:333 [G] t:11 [VAL] a:341 [U] ✔
1t:79 [ARG] 1a:260 [G] t:73 [ARG] a:268 [G] ✔
1t:79 [ARG] 1a:261 [U] t:73 [ARG] a:269 [U] ✔
1t:79 [ARG] 1a:262 [A] t:73 [ARG] a:270 [A] ✔
1t:79 [ARG] 1a:263 [A] t:73 [ARG] a:271 [A] ✔
1t:75 [ASN] 1a:132 [C] t:69 [ASN] a:132 [C] ✔
1t:75 [ASN] 1a:262 [A] t:69 [ASN] a:270 [A] ✔
1t:75 [ASN] 1a:263 [A] t:69 [ASN] a:271 [A] ✔
1t:21 [LYS] 1a:103 [C] t:16 [LYS] a:102 [C] ✔
1t:21 [LYS] 1a:104 [G] t:16 [LYS] a:103 [G] ✔
1t:68 [LYS] 1a:196 [A] t:63 [SER] a:210 [A] ✔
1t:65 [LYS] 1a:177 [C] t:59 [LYS] a:177 [G] ✔
1t:65 [LYS] 1a:178 [C] t:59 [LYS] a:178 [G] ✔
1t:65 [LYS] 1a:194 [C] t:59 [LYS] a:208 [U] ✔
1t:65 [LYS] 1a:195 [A] t:59 [LYS] a:209 [G] ✔
1t:23 [ARG] 1a:322 [C] t:18 [GLU] a:330 [C] ✔
1t:23 [ARG] 1a:323 [U] t:18 [GLU] a:331 [U] ✔
1t:61 [SER] 1a:193 [C] t:55 [LYS] a:207 [G] ✔
1t:61 [SER] 1a:194 [C] t:55 [LYS] a:208 [U] ✔
1t:10 [LEU] 1a:61 [G] t:4 [ILE] a:62 [G] ✔
1t:10 [LEU] 1a:331 [G] t:4 [ILE] a:339 [G] ✔
1t:76 [ALA] 1a:262 [A] t:70 [LYS] a:270 [A] ✔
1t:35 [THR] 1a:1457 [G] t:30 [THR] a:1468 [G] ✔
1t:14 [LYS] 1a:103 [C] t:9 [LYS] a:102 [C] ✔
1t:14 [LYS] 1a:104 [G] t:9 [LYS] a:103 [G] ✔
1t:26 [ASN] 1a:323 [U] t:21 [ASN] a:331 [U] ✔
1t:26 [ASN] 1a:324 [G] t:21 [ASN] a:332 [G] ✔
1t:18 [GLN] 1a:104 [G] t:13 [THR] a:103 [G] ✔
1t:18 [GLN] 1a:105 [G] t:13 [THR] a:104 [G] ✔
1t:30 [LYS] 1a:323 [U] t:25 [LYS] a:331 [U] ✔
1t:39 [LYS] 1a:1456 [G] t:34 [ASN] a:1467 [A] ✔
1t:39 [LYS] 1a:1457 [G] t:34 [ASN] a:1468 [G] ✔
1t:25 [ARG] 1a:174 [C] t:20 [ARG] a:174 [A] ✔
1t:25 [ARG] 1a:175 [C] t:20 [ARG] a:175 [C] ✔
1t:17 [ARG] 1a:103 [C] t:12 [LYS] a:102 [C] ✔
1t:64 [ASP] 1a:185 [A] t:58 [ASP] a:184 [A] ✔
1t:64 [ASP] 1a:193 [C] t:58 [ASP] a:207 [G] ✔
1t:64 [ASP] 1a:194 [C] t:58 [ASP] a:208 [U] ✔
1t:15 [ARG] 1a:106 [C] t:10 [ARG] a:105 [C] ✔
1t:15 [ARG] 1a:107 [G] t:10 [ARG] a:106 [G] ✔
1t:15 [ARG] 1a:108 [G] t:10 [ARG] a:107 [G] ✔
1t:89 [ARG] 1a:187 [C] t:80 [THR] a:186 [U] ✔
1t:89 [ARG] 1a:188 [C] t:80 [THR] a:187 [U] ✔
1t:82 [SER] 1a:186 [C] t:75 [LYS] a:185 [U] ✔
1t:82 [SER] 1a:187 [C] t:75 [LYS] a:186 [U] ✔
1t:29 [LYS] 1a:176 [C] t:24 [GLN] a:176 [C] ✔
1t:78 [ALA] 1a:185 [A] t:72 [ASP] a:184 [A] ✔
1t:78 [ALA] 1a:186 [C] t:72 [ASP] a:185 [U] ✔
1t:12 [ALA] 1a:108 [G] t:7 [ALA] a:107 [G] ❌ 6S0X_t_a
1t:60 [GLU] 1a:185 [A] t:54 [VAL] a:184 [A] ❌ 6S0X_t_a
1t:60 [GLU] 1a:186 [C] t:54 [VAL] a:185 [U] ❌ 6S0X_t_a
1t:22 [ARG] 1a:105 [G] t:17 [ALA] a:104 [G] ❌ 6S0X_t_a
1t:22 [ARG] 1a:324 [G] t:17 [ALA] a:332 [G] ❌ 6S0X_t_a
1t:68 [LYS] 1a:177 [C] t:63 [SER] a:177 [G] ❌ 6S0X_t_a
1t:68 [LYS] 1a:194 [C] t:63 [SER] a:208 [U] ❌ 6S0X_t_a
1t:68 [LYS] 1a:195 [A] t:63 [SER] a:209 [G] ❌ 6S0X_t_a
1t:68 [LYS] 1a:223 [U] t:63 [SER] a:231 [U] ❌ 6S0X_t_a
1t:10 [LEU] 1a:332 [G] t:4 [ILE] a:340 [G] ❌ 6S0X_t_a
1t:83 [ARG] 1a:259 [G] t:76 [SER] a:267 [G] ❌ 6S0X_t_a
1t:83 [ARG] 1a:260 [G] t:76 [SER] a:268 [G] ❌ 6S0X_t_a
1t:83 [ARG] 1a:261 [U] t:76 [SER] a:269 [U] ❌ 6S0X_t_a
1t:76 [ALA] 1a:263 [A] t:70 [LYS] a:271 [A] ❌ 6S0X_t_a
1t:17 [ARG] 1a:102 [G] t:12 [LYS] a:101 [G] ❌ 6S0X_t_a
1t:29 [LYS] 1a:175 [C] t:24 [GLN] a:175 [C] ❌ 6S0X_t_a
1t:15 [ARG] 1a:323 [U] t:10 [ARG] a:331 [U] ❌ 4Y4O_1t_1a
1t:25 [ARG] 1a:176 [C] t:20 [ARG] a:176 [C] ❌ 4Y4O_1t_1a
1t:25 [ARG] 1a:104 [G] t:20 [ARG] a:103 [G] ❌ 4Y4O_1t_1a
1t:25 [ARG] 1a:105 [G] t:20 [ARG] a:104 [G] ❌ 4Y4O_1t_1a
1t:27 [LYS] 1a:323 [U] t:22 [ILE] a:331 [U] ❌ 4Y4O_1t_1a
1t:29 [LYS] 1a:177 [C] t:24 [GLN] a:177 [G] ❌ 4Y4O_1t_1a
1t:38 [LYS] 1a:1457 [G] t:33 [LYS] a:1468 [G] ❌ 4Y4O_1t_1a
1t:38 [LYS] 1a:1456 [G] t:33 [LYS] a:1467 [A] ❌ 4Y4O_1t_1a
1t:60 [GLU] 1a:194 [C] t:54 [VAL] a:208 [U] ❌ 4Y4O_1t_1a
1t:61 [SER] 1a:178 [C] t:55 [LYS] a:178 [G] ❌ 4Y4O_1t_1a
1t:76 [ALA] 1a:261 [U] t:70 [LYS] a:269 [U] ❌ 4Y4O_1t_1a
1t:76 [ALA] 1a:260 [G] t:70 [LYS] a:268 [G] ❌ 4Y4O_1t_1a
1t:78 [ALA] 1a:187 [C] t:72 [ASP] a:186 [U] ❌ 4Y4O_1t_1a
1t:82 [SER] 1a:185 [A] t:75 [LYS] a:184 [A] ❌ 4Y4O_1t_1a
1t:82 [SER] 1a:193 [C] t:75 [LYS] a:207 [G] ❌ 4Y4O_1t_1a
1t:83 [ARG] 1a:186 [C] t:76 [SER] a:185 [U] ❌ 4Y4O_1t_1a
1t:83 [ARG] 1a:187 [C] t:76 [SER] a:186 [U] ❌ 4Y4O_1t_1a
1t:14 [LYS] 1a:102 [G] t:9 [LYS] a:101 [G] ❌ 4Y4O_1t_1a
1t:11 [SER] 1a:62 [U] t:6 [SER] a:63 [U] ❌ 6S0X_a:63 no longer at interface
1t:31 [SER] 1a:1458 [G] t:26 [SER] a:1469 [C] ❌ 6S0X_t:26, 6S0X_a:1469 no longer at interface
1t:31 [SER] 1a:1459 [C] t:26 [SER] a:1470 [U] ❌ 6S0X_t:26, 6S0X_a:1470 no longer at interface
1t:27 [LYS] 1a:1458 [G] t:22 [ILE] a:1469 [C] ❌ 6S0X_a:1469 no longer at interface
1t:27 [LYS] 1a:1459 [C] t:22 [ILE] a:1470 [U] ❌ 6S0X_a:1470 no longer at interface
1t:75 [ASN] 1a:131 [C] t:69 [ASN] a:131 [C] ❌ 6S0X_a:131 no longer at interface
1t:21 [LYS] 1a:150 [C] t:16 [LYS] a:150 [U] ❌ 6S0X_a:150 no longer at interface
1t:28 [ALA] 1a:1458 [G] t:23 [SER] a:1469 [C] ❌ 6S0X_t:23, 6S0X_a:1469 no longer at interface
1t:28 [ALA] 1a:1459 [C] t:23 [SER] a:1470 [U] ❌ 6S0X_t:23, 6S0X_a:1470 no longer at interface
1t:74 [LYS] 1a:184 [G] t:68 [SER] a:183 [U] ❌ 6S0X_t:68, 6S0X_a:183 no longer at interface
1t:74 [LYS] 1a:224 [C] t:68 [SER] a:232 [A] ❌ 6S0X_t:68, 6S0X_a:232 no longer at interface
1t:74 [LYS] 1a:225 [C] t:68 [SER] a:233 [U] ❌ 6S0X_t:68, 6S0X_a:233 no longer at interface
1t:10 [LEU] 1a:60 [A] t:4 [ILE] a:61 [A] ❌ 6S0X_a:61 no longer at interface
1t:35 [THR] 1a:1458 [G] t:30 [THR] a:1469 [C] ❌ 6S0X_a:1469 no longer at interface
1t:32 [ALA] 1a:1458 [G] t:27 [ALA] a:1469 [C] ❌ 6S0X_t:27, 6S0X_a:1469 no longer at interface
1t:38 [LYS] 1a:1439 [C] t:33 [LYS] a:1448 [G] ❌ 6S0X_a:1448 no longer at interface
1t:38 [LYS] 1a:1440 [C] t:33 [LYS] a:1449 [G] ❌ 6S0X_a:1449 no longer at interface
1t:58 [LYS] 1a:1452 [C] t:52 [LEU] a:1459 [C] ❌ 6S0X_t:52, 6S0X_a:1459 no longer at interface
1t:24 [LEU] 1a:1459 [C] t:19 [ALA] a:1470 [U] ❌ 6S0X_t:19, 6S0X_a:1470 no longer at interface
1t:34 [LYS] 1a:1437 [C] t:29 [ARG] a:1446 [C] ❌ 6S0X_t:29, 6S0X_a:1446 no longer at interface
1t:34 [LYS] 1a:1438 [G] t:29 [ARG] a:1447 [C] ❌ 6S0X_t:29, 6S0X_a:1447 no longer at interface
1t:8 [ARG] 1a:351 [G] t:2 [ALA] a:359 [G] ❌ 4Y4O_1t:8, 4Y4O_1a:351 no longer at interface
1t:9 [ASN] 1a:350 [G] t:3 [ASN] a:358 [G] ❌ 4Y4O_1t:9, 4Y4O_1a:350 no longer at interface
1t:61 [SER] 1a:179 [A] t:55 [LYS] a:179 [A] ❌ 4Y4O_1a:179 no longer at interface
1t:36 [LEU] 1a:1456 [G] t:31 [ALA] a:1467 [A] ❌ 6S0X_t:31 no longer at interface
1t:36 [LEU] 1a:1457 [G] t:31 [ALA] a:1468 [G] ❌ 6S0X_t:31 no longer at interface
1t:81 [LYS] 1a:185 [A] t:74 [ILE] a:184 [A] ❌ 6S0X_t:74 no longer at interface
1t:81 [LYS] 1a:186 [C] t:74 [ILE] a:185 [U] ❌ 6S0X_t:74 no longer at interface
1t:81 [LYS] 1a:193 [C] t:74 [ILE] a:207 [G] ❌ 6S0X_t:74 no longer at interface
1t:74 [LYS] 1a:185 [A] t:68 [SER] a:184 [A] ❌ 6S0X_t:68 no longer at interface
1t:57 [ARG] 1a:192 [U] t:51 [SER] a:206 [A] ❌ 6S0X_t:51 no longer at interface
1t:57 [ARG] 1a:193 [C] t:51 [SER] a:207 [G] ❌ 6S0X_t:51 no longer at interface
1t:77 [ALA] 1a:185 [A] t:71 [ALA] a:184 [A] ❌ 6S0X_t:71 no longer at interface
1t:54 [LYS] 1a:1456 [G] t:49 [LEU] a:1467 [A] ❌ 6S0X_t:49 no longer at interface
1t:32 [ALA] 1a:1457 [G] t:27 [ALA] a:1468 [G] ❌ 6S0X_t:27 no longer at interface
1t:51 [GLU] 1a:1456 [G] t:46 [LYS] a:1467 [A] ❌ 6S0X_t:46 no longer at interface
1t:85 [MET] 1a:186 [C] t:78 [LEU] a:185 [U] ❌ 6S0X_t:78 no longer at interface
1t:85 [MET] 1a:187 [C] t:78 [LEU] a:186 [U] ❌ 6S0X_t:78 no longer at interface
1t:85 [MET] 1a:191 [G] t:78 [LEU] a:205 [A] ❌ 6S0X_t:78 no longer at interface
1t:85 [MET] 1a:192 [U] t:78 [LEU] a:206 [A] ❌ 6S0X_t:78 no longer at interface
1t:43 [LEU] 1a:1456 [G] t:38 [ALA] a:1467 [A] ❌ 6S0X_t:38 no longer at interface
1t:8 [ARG] 1a:331 [G] t:2 [ALA] a:339 [G] ❌ 4Y4O_1t:8 no longer at interface
1t:9 [ASN] 1a:332 [G] t:3 [ASN] a:340 [G] ❌ 4Y4O_1t:9 no longer at interface
1t:9 [ASN] 1a:331 [G] t:3 [ASN] a:339 [G] ❌ 4Y4O_1t:9 no longer at interface
1t:67 [ALA] 1a:223 [U] t:61 [ALA] a:231 [U] ❌ 4Y4O_1t:67 no longer at interface
1t:69 [GLY] 1a:325 [A] t:64 [ASN] a:333 [A] ❌ 4Y4O_1t:69 no longer at interface
1t:69 [GLY] 1a:324 [G] t:64 [ASN] a:332 [G] ❌ 4Y4O_1t:69 no longer at interface
1t:84 [LEU] 1a:259 [G] t:77 [GLN] a:267 [G] ❌ 4Y4O_1t:84 no longer at interface
1t:84 [LEU] 1a:258 [G] t:77 [GLN] a:266 [A] ❌ 4Y4O_1t:84 no longer at interface
1t:88 [VAL] 1a:187 [C] t:79 [MET] a:186 [U] ❌ 4Y4O_1t:88 no longer at interface
1t:88 [VAL] 1a:186 [C] t:79 [MET] a:185 [U] ❌ 4Y4O_1t:88 no longer at interface
1t:88 [VAL] 1a:188 [C] t:79 [MET] a:187 [U] ❌ 4Y4O_1t:88 no longer at interface
1t:88 [VAL] 1a:191 [G] t:79 [MET] a:205 [A] ❌ 4Y4O_1t:88 no longer at interface
1t:88 [VAL] 1a:192 [U] t:79 [MET] a:206 [A] ❌ 4Y4O_1t:88 no longer at interface
1t:13 [LEU] 1a:102 [G] t:8 [ILE] a:101 [G] ❌ 4Y4O_1t:13 no longer at interface
1t:92 [LEU] 1a:188 [C] t:81 [ALA] a:187 [U] ❌ 4Y4O_1t:92 no longer at interface
1t:98 [PRO] 1a:187 [C] t:82 [ASN] a:186 [U] ❌ 4Y4O_1t:98 no longer at interface
1t:98 [PRO] 1a:188 [C] t:82 [ASN] a:187 [U] ❌ 4Y4O_1t:98 no longer at interface
1t:98 [PRO] 1a:191 [G] t:82 [ASN] a:205 [A] ❌ 4Y4O_1t:98 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein S20 Bacterial small subunit ribosomal RNA 0.94 3.25 0.34 0.72 0.95 0.75 0.91 0.51 0.44 0.09 0.63


Other pairs involving 4Y4O_1t_1a or 6S0X_t_a

Total number of entries: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1t_1a 7RYG_t_a 0.41 0.91 2.68 0.25 Ribosomal protein S20 Bacterial small subunit ribosomal RNA compare
4Y4O_1t_1a 6S0X_t_a 0.51 0.94 3.25 0.34 Ribosomal protein S20 Bacterial small subunit ribosomal RNA compare
4Y4O_1t_1a 7K00_T_A 0.70 0.97 1.35 0.39 Ribosomal protein S20 Bacterial small subunit ribosomal RNA compare
6S0X_t_a 7K00_T_A 0.54 0.95 3.16 0.36 Ribosomal protein S20 Bacterial small subunit ribosomal RNA compare
6S0X_t_a 7RYG_t_a 0.56 0.96 2.34 0.41 Ribosomal protein S20 Bacterial small subunit ribosomal RNA compare
2VQE_T_A 6S0X_t_a 0.43 0.95 3.18 0.3 Ribosomal protein S20 Bacterial small subunit ribosomal RNA compare
2VQE_T_A 4Y4O_1t_1a 0.85 0.99 1.0 0.87 Ribosomal protein S20 Bacterial small subunit ribosomal RNA compare