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All interfaces > All interologs > Interface groups > group75 > 6S0X_t_a

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6S0X_t
6S0X_a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
t:2 [ALA] a:339 [G] 3.96 a:109 [C] 85.84
t:2 [ALA] a:359 [G] 4.59 a:346 [A] 85.84
t:3 [ASN] a:339 [G] 3.38 a:109 [C] 80.21
t:3 [ASN] a:340 [G] 3.46 a:329 [A] 80.21
t:3 [ASN] a:358 [G] 3.85 a:347 [C] 80.21
t:4 [ILE] a:62 [G] 3.41 a:105 [C] 77.04
t:4 [ILE] a:339 [G] 4.59 a:109 [C] 77.04
t:5 [LYS] a:62 [G] 4.86 a:105 [C] 72.92
t:6 [SER] a:62 [G] 3.89 a:105 [C] base:SC 90.65
t:6 [SER] a:106 [G] 3.3 base:SC 90.65
t:7 [ALA] a:340 [G] 3.32 a:329 [A] sugar:BB 84.14
t:8 [ILE] a:101 [G] 4.54 a:68 [C] 37.42
t:9 [LYS] a:101 [G] 4.43 a:68 [C] 98.38
t:9 [LYS] a:102 [C] 2.43 a:67 [G] 98.38
t:9 [LYS] a:103 [G] 4.36 a:64 [C] 98.38
t:10 [ARG] a:105 [C] 3.85 a:62 [G] 80.3
t:10 [ARG] a:106 [G] 2.75 80.3
t:10 [ARG] a:107 [G] 3.19 a:334 [G] 80.3
t:10 [ARG] a:331 [U] 4.9 a:335 [A] 80.3
t:11 [VAL] a:340 [G] 4.06 a:329 [A] 57.07
t:11 [VAL] a:341 [U] 3.8 a:328 [A] 57.07
t:12 [LYS] a:102 [C] 4.33 a:67 [G] 80.8
t:13 [THR] a:103 [G] 3.43 a:64 [C] 73.16
t:13 [THR] a:104 [G] 4.58 a:63 [U] 73.16
t:14 [THR] a:330 [C] 4.71 a:337 [A] 73.78
t:14 [THR] a:331 [U] 3.07 a:335 [A] sugar:SC, sugar:SC 73.78
t:16 [LYS] a:102 [C] 2.65 a:67 [G] 67.02
t:16 [LYS] a:103 [G] 3.32 a:64 [C] 67.02
t:17 [ALA] a:331 [U] 4.92 a:335 [A] 69.63
t:18 [GLU] a:330 [C] 2.33 a:337 [A] sugar:SC 65.19
t:18 [GLU] a:331 [U] 3.67 a:335 [A] 65.19
t:20 [ARG] a:103 [G] 3.51 a:64 [C] 69.45
t:20 [ARG] a:104 [G] 3.42 a:63 [U] 69.45
t:20 [ARG] a:174 [A] 3.52 a:148 [G] sugar:SC 69.45
t:20 [ARG] a:175 [C] 3.55 a:147 [G] 69.45
t:20 [ARG] a:176 [C] 4.58 a:146 [G] 69.45
t:21 [ASN] a:331 [U] 3.32 a:335 [A] 99.0
t:21 [ASN] a:332 [G] 3.41 a:108 [A] 99.0
t:22 [ILE] a:331 [U] 4.96 a:335 [A] 55.34
t:24 [GLN] a:176 [C] 3.31 a:146 [G] 3.45
t:24 [GLN] a:177 [G] 4.37 a:145 [U] 3.45
t:25 [LYS] a:331 [U] 4.59 a:335 [A] 77.9
t:30 [THR] a:1468 [G] 3.63 a:1455 [U] 80.02
t:33 [LYS] a:1467 [A] 4.01 81.97
t:33 [LYS] a:1468 [G] 3.67 a:1455 [U] 81.97
t:34 [ASN] a:1467 [A] 4.7 49.56
t:34 [ASN] a:1468 [G] 4.8 a:1455 [U] 49.56
t:54 [VAL] a:206 [A] 4.25 4.82
t:54 [VAL] a:207 [G] 3.88 4.82
t:54 [VAL] a:208 [U] 4.34 4.82
t:55 [LYS] a:178 [G] 3.41 a:144 [C] 75.47
t:55 [LYS] a:179 [A] 2.85 75.47
t:55 [LYS] a:207 [G] 4.63 75.47
t:55 [LYS] a:208 [U] 3.38 75.47
t:58 [ASP] a:184 [A] 4.97 98.71
t:58 [ASP] a:207 [G] 2.71 98.71
t:58 [ASP] a:208 [U] 3.98 98.71
t:59 [LYS] a:177 [G] 4.24 a:145 [U] 79.74
t:59 [LYS] a:178 [G] 4.74 a:144 [C] 79.74
t:59 [LYS] a:208 [U] 4.09 79.74
t:59 [LYS] a:209 [G] 2.4 a:141 [A] 79.74
t:61 [ALA] a:231 [U] 4.98 a:140 [A] 74.29
t:62 [GLN] a:208 [U] 3.59 52.83
t:62 [GLN] a:209 [G] 3.08 a:141 [A] 52.83
t:62 [GLN] a:210 [A] 3.11 52.83
t:62 [GLN] a:230 [U] 4.5 52.83
t:62 [GLN] a:231 [U] 3.51 a:140 [A] 52.83
t:63 [SER] a:210 [A] 4.98 68.94
t:64 [ASN] a:332 [G] 4.94 a:108 [A] 62.78
t:64 [ASN] a:333 [A] 2.71 62.78
t:67 [HIS] a:132 [C] 3.59 a:238 [G] 89.67
t:67 [HIS] a:133 [U] 3.25 a:237 [U] 89.67
t:67 [HIS] a:270 [A] 3.36 89.67
t:69 [ASN] a:132 [C] 4.24 a:238 [G] 90.55
t:69 [ASN] a:270 [A] 3.36 90.55
t:69 [ASN] a:271 [A] 4.31 90.55
t:70 [LYS] a:268 [G] 4.19 65.38
t:70 [LYS] a:269 [U] 2.91 65.38
t:70 [LYS] a:270 [A] 4.69 65.38
t:72 [ASP] a:184 [A] 3.2 80.5
t:72 [ASP] a:185 [U] 2.97 80.5
t:72 [ASP] a:186 [U] 3.88 a:204 [A] 80.5
t:73 [ARG] a:268 [G] 3.34 sugar:SC 98.61
t:73 [ARG] a:269 [U] 3.85 98.61
t:73 [ARG] a:270 [A] 2.77 98.61
t:73 [ARG] a:271 [A] 2.54 98.61
t:75 [LYS] a:184 [A] 3.25 sugar:SC 90.11
t:75 [LYS] a:185 [U] 3.51 90.11
t:75 [LYS] a:186 [U] 3.4 a:204 [A] 90.11
t:75 [LYS] a:207 [G] 4.59 90.11
t:76 [SER] a:185 [U] 4.62 91.51
t:76 [SER] a:186 [U] 3.26 a:204 [A] 91.51
t:77 [GLN] a:266 [A] 4.28 a:276 [U] 73.87
t:77 [GLN] a:267 [G] 2.86 a:275 [C] 73.87
t:79 [MET] a:185 [U] 3.35 45.24
t:79 [MET] a:186 [U] 2.85 a:204 [A] 45.24
t:79 [MET] a:187 [U] 3.23 a:203 [A] 45.24
t:79 [MET] a:205 [A] 3.42 45.24
t:79 [MET] a:206 [A] 3.56 45.24
t:80 [THR] a:186 [U] 3.45 a:204 [A] 50.52
t:80 [THR] a:187 [U] 2.95 a:203 [A] 50.52
t:81 [ALA] a:187 [U] 4.72 a:203 [A] 80.04
t:82 [ASN] a:186 [U] 4.58 a:204 [A] 66.67
t:82 [ASN] a:187 [U] 3.33 a:203 [A] 66.67
t:82 [ASN] a:205 [A] 3.3 66.67

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group75 6S0X_t_a t: 30s ribosomal protein s20, Staphylococcus aureus (natural) a: 16s ribosomal RNA, Staphylococcus aureus (natural) W8UXC3 Ribosomal protein S20 Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1t_1a 6S0X_t_a 0.51 0.94 3.25 0.34 Ribosomal protein S20 Bacterial small subunit ribosomal RNA compare
6S0X_t_a 7K00_T_A 0.54 0.95 3.16 0.36 Ribosomal protein S20 Bacterial small subunit ribosomal RNA compare
6S0X_t_a 7RYG_t_a 0.56 0.96 2.34 0.41 Ribosomal protein S20 Bacterial small subunit ribosomal RNA compare
2VQE_T_A 6S0X_t_a 0.43 0.95 3.18 0.3 Ribosomal protein S20 Bacterial small subunit ribosomal RNA compare